KEGG   PATHWAY: php00030
Entry
php00030                    Pathway                                
Name
Pentose phosphate pathway - Phaeobacter porticola
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
php00030  Pentose phosphate pathway
php00030

Module
php_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:php00030]
php_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:php00030]
php_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:php00030]
Other DBs
GO: 0006098
Organism
Phaeobacter porticola [GN:php]
Gene
PhaeoP97_00713  pgi; glucose-6-phosphate isomerase Pgi [KO:K01810] [EC:5.3.1.9]
PhaeoP97_00712  zwf2; glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
PhaeoP97_01513  zwf1; glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
PhaeoP97_01514  pgl; 6-phosphogluconolactonase Pgl [KO:K01057] [EC:3.1.1.31]
PhaeoP97_02939  rpe; ribulose-phosphate 3-epimerase Rpe [KO:K01783] [EC:5.1.3.1]
PhaeoP97_03854  tktA_2; transketolase TktA [KO:K00615] [EC:2.2.1.1]
PhaeoP97_03855  dxs_2; 1-deoxy-D-xylulose-5-phosphate synthase Dxs [KO:K00615] [EC:2.2.1.1]
PhaeoP97_01725  tktA_1; transketolase TktA [KO:K00615] [EC:2.2.1.1]
PhaeoP97_02778  tal; transaldolase Tal [KO:K00616] [EC:2.2.1.2]
PhaeoP97_02245  rpiA; ribose-5-phosphate isomerase A [KO:K01807] [EC:5.3.1.6]
PhaeoP97_01045  rpiB; ribose-5-phosphate isomerase B [KO:K01808] [EC:5.3.1.6]
PhaeoP97_03187  putative deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
PhaeoP97_03449  putative pfkB family carbohydrate kinase [KO:K00852] [EC:2.7.1.15]
PhaeoP97_01192  deoB; phosphopentomutase DeoB [KO:K01839] [EC:5.4.2.7]
PhaeoP97_02305  algC; phosphomannomutase/phosphoglucomutase AlgC [KO:K15778] [EC:5.4.2.8 5.4.2.2]
PhaeoP97_02925  phnN; putative ATP-binding protein PhnN [KO:K05774] [EC:2.7.4.23]
PhaeoP97_02375  prs; ribose-phosphate pyrophosphokinase Prs [KO:K00948] [EC:2.7.6.1]
PhaeoP97_00711  edd; phosphogluconate dehydratase Edd [KO:K01690] [EC:4.2.1.12]
PhaeoP97_00710  eda; KHG/KDPG aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
PhaeoP97_00146  putative hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
PhaeoP97_02259  fda; fructose-bisphosphate aldolase class 1 [KO:K01623] [EC:4.1.2.13]
PhaeoP97_02470  putative 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase [KO:K01624] [EC:4.1.2.13]
PhaeoP97_00828  glpX; fructose-1,6-bisphosphatase class 2 [KO:K11532] [EC:3.1.3.11 3.1.3.37]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
php00010  Glycolysis / Gluconeogenesis
php00040  Pentose and glucuronate interconversions
php00052  Galactose metabolism
php00230  Purine metabolism
php00240  Pyrimidine metabolism
php00340  Histidine metabolism
php00630  Glyoxylate and dicarboxylate metabolism
php00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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