KEGG   PATHWAY: bof03430
Entry
bof03430                    Pathway                                
Name
Mismatch repair - Bosea sp. F3-2
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
bof03430  Mismatch repair
bof03430

Other DBs
GO: 0006298
Organism
Bosea sp. F3-2 [GN:bof]
Gene
FQV39_18270  mutS; DNA mismatch repair protein MutS [KO:K03555]
FQV39_12520  mutL; DNA mismatch repair endonuclease MutL [KO:K03572]
FQV39_28255  AAA family ATPase [KO:K03657] [EC:5.6.2.4]
FQV39_04505  ATP-dependent helicase [KO:K03657] [EC:5.6.2.4]
FQV39_21225  ATP-dependent helicase [KO:K03657] [EC:5.6.2.4]
FQV39_12450  exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
FQV39_11585  exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
FQV39_08225  recJ; single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
FQV39_03915  ssb; single-stranded DNA-binding protein [KO:K03111]
FQV39_02245  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
FQV39_31465  hypothetical protein [KO:K02337] [EC:2.7.7.7]
FQV39_28595  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
FQV39_18515  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
FQV39_19210  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
FQV39_19755  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
FQV39_02995  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
FQV39_30045  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
FQV39_07760  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
FQV39_19690  dnaQ; DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
FQV39_02200  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
FQV39_28190  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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