KEGG   PATHWAY: cmax00020
Entry
cmax00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Cucurbita maxima (winter squash)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cmax00020  Citrate cycle (TCA cycle)
cmax00020

Module
cmax_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cmax00020]
cmax_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cmax00020]
cmax_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cmax00020]
Other DBs
GO: 0006099
Organism
Cucurbita maxima (winter squash) [GN:cmax]
Gene
111483841  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
111488392  citrate synthase, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
111469653  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
111497935  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
111496563  ATP-citrate synthase alpha chain protein 1-like [KO:K01648] [EC:2.3.3.8]
111467875  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
111466495  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
111492005  ATP-citrate synthase alpha chain protein 1-like [KO:K01648] [EC:2.3.3.8]
111495992  ATP-citrate synthase beta chain protein 2-like [KO:K01648] [EC:2.3.3.8]
111499083  ATP-citrate synthase beta chain protein 2-like [KO:K01648] [EC:2.3.3.8]
111494537  ATP-citrate synthase beta chain protein 2 [KO:K01648] [EC:2.3.3.8]
111477733  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
111497319  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
111485932  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
111468105  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
111489234  cytosolic isocitrate dehydrogenase [NADP] isoform X1 [KO:K00031] [EC:1.1.1.42]
111489818  isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial-like [KO:K00031] [EC:1.1.1.42]
111487821  cytosolic isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
111487611  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
111483775  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
111471141  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial [KO:K00030] [EC:1.1.1.41]
111469830  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
111477965  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
111477663  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
111497352  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
111489009  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
111476586  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
111477332  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
111480576  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial [KO:K00658] [EC:2.3.1.61]
111476401  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
111494297  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
111499118  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
111470800  dihydrolipoyl dehydrogenase 1, mitochondrial [KO:K00382] [EC:1.8.1.4]
111495830  succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
111490037  succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
111498139  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
111483154  succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [KO:K00234] [EC:1.3.5.1]
111486619  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
111481863  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [KO:K00235] [EC:1.3.5.1]
111481099  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [KO:K00235] [EC:1.3.5.1]
111482474  fumarate hydratase 1, mitochondrial-like isoform X1 [KO:K01679] [EC:4.2.1.2]
111493132  fumarate hydratase 1, mitochondrial [KO:K01679] [EC:4.2.1.2]
111494766  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
111479208  malate dehydrogenase-like isoform X1 [KO:K00025] [EC:1.1.1.37]
111498914  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
111482765  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
111496925  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
111484814  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
111471234  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
111477593  malate dehydrogenase, glyoxysomal-like isoform X1 [KO:K00026] [EC:1.1.1.37]
111480781  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
111497417  phosphoenolpyruvate carboxykinase (ATP)-like [KO:K01610] [EC:4.1.1.49]
111482814  phosphoenolpyruvate carboxykinase (ATP)-like [KO:K01610] [EC:4.1.1.49]
111478035  phosphoenolpyruvate carboxykinase (ATP)-like [KO:K01610] [EC:4.1.1.49]
111469141  phosphoenolpyruvate carboxykinase (ATP)-like [KO:K01610] [EC:4.1.1.49]
111480249  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
111493973  pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
111488634  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic [KO:K00161] [EC:1.2.4.1]
111496066  pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
111497694  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
111488043  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X1 [KO:K00162] [EC:1.2.4.1]
111490432  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [KO:K00162] [EC:1.2.4.1]
111471428  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like isoform X1 [KO:K00627] [EC:2.3.1.12]
111487198  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
111479913  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like isoform X1 [KO:K00627] [EC:2.3.1.12]
111477870  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
111477148  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
111492896  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like isoform X1 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cmax00010  Glycolysis / Gluconeogenesis
cmax00053  Ascorbate and aldarate metabolism
cmax00061  Fatty acid biosynthesis
cmax00062  Fatty acid elongation
cmax00071  Fatty acid degradation
cmax00190  Oxidative phosphorylation
cmax00220  Arginine biosynthesis
cmax00250  Alanine, aspartate and glutamate metabolism
cmax00280  Valine, leucine and isoleucine degradation
cmax00350  Tyrosine metabolism
cmax00470  D-Amino acid metabolism
cmax00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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