KEGG   Aliivibrio fischeri ES114: VF_0490
Entry
VF_0490           CDS       T00236                                 
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase (PNPase)
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
vfi  Aliivibrio fischeri ES114
Pathway
vfi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vfi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    VF_0490 (pnp)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vfi03019]
    VF_0490 (pnp)
   03016 Transfer RNA biogenesis [BR:vfi03016]
    VF_0490 (pnp)
Enzymes [BR:vfi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     VF_0490 (pnp)
Messenger RNA biogenesis [BR:vfi03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     VF_0490 (pnp)
Transfer RNA biogenesis [BR:vfi03016]
 Prokaryotic type
  tRNA degradation factors
   VF_0490 (pnp)
SSDB
Motif
Pfam: RNase_PH PNPase RNase_PH_C S1 KH_1 S1_2 KH_2 SLS1_KH2
Other DBs
NCBI-ProteinID: AAW84985
UniProt: Q5E7L1
Position
I:526147..528276
AA seq 709 aa
MFANPVVKSFQYGNHTVTLETGVIARQATAAVMASMDDTSVFVSVVAKKEAVPGQDFFPL
TVNYQERTYAAGKIPGGFFKREGRPSEAETLTARLIDRPIRPLFPDAFKNEVQVIATVVS
INPEVNPDMITMIGTSAALAIAGIPFNGPIGAARVGHINGELVLNPSNTELENSKLDLVV
SGTEGAVLMVESEADNLTEEEMLSAVVFGHEQQQVVINAINEFAAEVATPAWDWVAPEEN
TVLNARIAELAEAKLVEAYQITEKMTRYDRIHEIAAEVNEVLVSENEDVNLKEVHTIFHD
LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQ
RDAQIIDSLMGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIQAVMPSIE
EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLS
DILGDEDHLGDMDFKVAGTNEGITALQMDIKIEGITKEIMQIALNQAQGARKHILKVMDE
AISGAREEISEFAPRIHTMKISSDKIKDVIGKGGAVIRALCEETGTTIEIEDDGTIKIAA
TEGAAAKEAIRRIEEITAEVEVGKIYTGKVMRIVDFGAFVTVLGPKEGLVHISQIAEERI
EKVADHLQVGQEVKTKVLEIDRQGRIRLSIKEANAELNPAPAAEAKDAE
NT seq 2130 nt   +upstreamnt  +downstreamnt
atgttcgcgaatccagtcgtaaaatcatttcagtacggtaaccataccgttactctagaa
acgggtgtaattgctcgtcaagctacagctgctgtaatggcaagcatggacgatacatct
gtattcgtttctgttgttgctaagaaagaagcggttccaggccaagatttcttcccacta
acagttaactaccaagagcgtacgtacgctgcgggcaaaatccctggtggtttctttaag
cgtgaaggtcgtccttctgaagctgaaacactaacagctcgtctaattgaccgtccaatc
cgtcctcttttccctgatgcattcaaaaacgaagtacaggtaattgcaacggttgtttct
atcaaccctgaagttaacccagacatgatcactatgatcggtacgtctgcggcattagct
atcgctggtattccatttaatggtcctatcggtgctgcacgtgttggtcacatcaacggt
gagcttgttcttaacccatcaaatactgaacttgaaaactctaaactagacctagttgtg
tctggtacagaaggtgcagtattaatggttgaatcagaagctgataacctaactgaagaa
gaaatgctttctgctgttgtattcggtcacgaacaacaacaagtagttatcaacgctatc
aacgaattcgctgctgaagttgcaactccagcatgggattgggttgctccagaagagaac
acagttcttaacgcgcgtattgcagagttagcagaagctaaattagttgaagcttaccaa
attactgaaaaaatgactcgttacgatcgcattcatgaaatcgcagctgaagttaacgaa
gttctagtatctgaaaacgaagacgtgaacctaaaagaagttcacactatcttccacgat
ctagagaaaacagttgtacgtcgcagcatcatcgctggtaacccacgtatcgatggtcgt
gaaaaagacatggttcgtgcgctagacgtacgtactggtgttcttccacgtactcacggt
tcttctctattcacacgcggtgaaactcaagctcttgttactgcaacgcttggtacacaa
cgtgatgctcaaatcatcgatagcctaatgggtgagaagaaagatcacttccttctacac
tacaatttccctccatactgtgtaggtgaaactggttttgttggttctcctaagcgtcgt
gaaatcggtcacggtaaactggctaaacgtggtatccaagcggttatgccttctattgaa
gaattcccatacacagtacgtgtagtatcggaaatcactgaatctaacggttcatcttca
atggcttctgtatgtggtacatctctagctcttatggatgctggtgttccaattaaagca
tctgttgctggtatcgcaatgggtcttgtgaaagaaggtgacgatttcgttgttctttct
gatattctaggtgacgaagaccaccttggtgatatggactttaaagtagcgggtactaac
gaaggtatcactgcacttcaaatggatatcaaaatcgaaggcatcactaaagagatcatg
cagatcgctctaaaccaagctcaaggtgcgcgtaagcacatccttaaagttatggatgaa
gctatctctggtgctcgtgaagagatctctgaatttgctccacgtatccacacaatgaag
atcagctctgataagatcaaagatgttatcggtaaaggtggtgcagttatccgtgctctt
tgtgaagagactggtacaactatcgaaatcgaagatgacggtacgatcaaaatcgctgca
actgaaggcgctgctgctaaagaagcgattcgtcgcatcgaagagatcactgctgaagtt
gaagttggtaagatctacacaggtaaagttatgcgtatcgtagatttcggtgcgttcgta
acggttcttggtcctaaagaaggtctagttcatatttctcaaatcgcagaagagcgcatc
gagaaagtagctgatcacctacaagttggtcaagaagtgaaaactaaagtacttgaaatc
gaccgtcaaggccgtatccgtctaagtattaaagaagcaaatgctgaactaaacccagca
cctgctgctgaagcaaaagacgcagaataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (33)   
   KEGG ORTHOLOGY (1)   
   RefGene (30)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (8)   
   Pfam (8)   
All databases (50)   

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