ID ILI2_ORYSJ Reviewed; 101 AA.
AC Q2R1J3; A0A0P0Y4F7;
DT 14-MAY-2014, integrated into UniProtKB/Swiss-Prot.
DT 24-JAN-2006, sequence version 1.
DT 27-NOV-2024, entry version 111.
DE RecName: Full=Transcription factor ILI2;
DE Short=OsILI2;
DE AltName: Full=Protein INCREASED LEAF INCLINATION 2;
GN Name=ILI2; OrderedLocusNames=LOC_Os11g39000, Os11g0603000;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16188032; DOI=10.1186/1741-7007-3-20;
RG The rice chromosomes 11 and 12 sequencing consortia;
RT "The sequence of rice chromosomes 11 and 12, rich in disease resistance
RT genes and recent gene duplications.";
RL BMC Biol. 3:20-20(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- FUNCTION: Atypical and probable non DNA-binding bHLH transcription
CC factor that integrates multiple signaling pathways to regulate cell
CC elongation and plant development. {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the bHLH protein family.
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DR EMBL; DP000010; ABA94608.1; -; Genomic_DNA.
DR EMBL; AP008217; BAF28599.1; -; Genomic_DNA.
DR EMBL; AP014967; BAT14773.1; -; Genomic_DNA.
DR EMBL; AK111303; BAG99204.1; -; mRNA.
DR RefSeq; XP_015616700.1; XM_015761214.1.
DR AlphaFoldDB; Q2R1J3; -.
DR SMR; Q2R1J3; -.
DR PaxDb; 39947-Q2R1J3; -.
DR EnsemblPlants; Os11t0603000-01; Os11t0603000-01; Os11g0603000.
DR Gramene; Os11t0603000-01; Os11t0603000-01; Os11g0603000.
DR HOGENOM; CLU_183267_0_0_1; -.
DR InParanoid; Q2R1J3; -.
DR OMA; KETCCHI; -.
DR OrthoDB; 5627441at2759; -.
DR PlantReactome; R-OSA-9826782; Regulation of seed germination and coleoptile growth under submergence and normal gravity environment.
DR Proteomes; UP000000763; Chromosome 11.
DR Proteomes; UP000059680; Chromosome 11.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR Gene3D; 4.10.280.10; Helix-loop-helix DNA-binding domain; 1.
DR InterPro; IPR011598; bHLH_dom.
DR InterPro; IPR036638; HLH_DNA-bd_sf.
DR InterPro; IPR044172; ILI2-like.
DR PANTHER; PTHR38546; DNA BINDING PROTEIN; 1.
DR PANTHER; PTHR38546:SF1; TRANSCRIPTION FACTOR ILI2; 1.
DR Pfam; PF00010; HLH; 1.
DR SUPFAM; SSF47459; HLH, helix-loop-helix DNA-binding domain; 1.
PE 3: Inferred from homology;
KW Growth regulation; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..101
FT /note="Transcription factor ILI2"
FT /id="PRO_0000429090"
FT DOMAIN 8..63
FT /note="bHLH"
FT /evidence="ECO:0000250"
FT REGION 1..22
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..16
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 101 AA; 10996 MW; 987DD26298D4FE1E CRC64;
MSSSRRSRTS SRLAAAPPPT DEQMAELISK LQAVLPTRGG EANAKQASSA EVLQEACRYI
RRLHREADAL SERLAELLLL QPSDLAINGA DVPDLIRSLL M
//
