Schemas

Schemas, or profiles, are JSON-formatted structures defining each object housed in encodeD. To support ENCODE Project submitters and public users alike, this page provides a user-friendly visualization method for our schemas to help organize and understand the data.

The links below lead to pages describing each schema ENCODE supports.

AggregateSeries
Analysis
AnalysisStep
AnalysisStepRun
AnalysisStepVersion
Annotation
AntibodyCharacterization
AntibodyLot
AtacAlignmentEnrichmentQualityMetric
AtacAlignmentQualityMetric
AtacLibraryQualityMetric
AtacPeakEnrichmentQualityMetric
AtacReplicationQualityMetric
Award
Biosample
BiosampleCharacterization
BiosampleType
BismarkQualityMetric
BpnetQualityMetric
BruLibraryQualityMetric
Cart
ChiaPetAlignmentQualityMetric
ChiaPetChrInteractionsQualityMetric
ChiaPetPeakEnrichmentQualityMetric
ChipAlignmentEnrichmentQualityMetric
ChipAlignmentQualityMetric
ChipLibraryQualityMetric
ChipPeakEnrichmentQualityMetric
ChipReplicationQualityMetric
ChipSeqFilterQualityMetric
CollectionSeries
ComplexityXcorrQualityMetric
ComputationalModel
CorrelationQualityMetric
CpgCorrelationQualityMetric
DifferentialAccessibilitySeries
DifferentiationSeries
DiseaseSeries
DnaseAlignmentQualityMetric
DnaseFootprintingQualityMetric
Document
DonorCharacterization
DuplicatesQualityMetric
EdwbamstatsQualityMetric
Experiment
ExperimentSeries
File
FilteringQualityMetric
FlyDonor
FunctionalCharacterizationExperiment
FunctionalCharacterizationSeries
GembsAlignmentQualityMetric
GencodeCategoryQualityMetric
Gene
GeneQuantificationQualityMetric
GeneSilencingSeries
GeneTypeQuantificationQualityMetric
GenericQualityMetric
GeneticModification
GeneticModificationCharacterization
HicQualityMetric
HistoneChipSeqQualityMetric
HotspotQualityMetric
HumanDonor
IDRQualityMetric
IdrSummaryQualityMetric
Image
Lab
Library
LongReadRnaMappingQualityMetric
LongReadRnaQuantificationQualityMetric
MadQualityMetric
ManateeDonor
MatchedSet
MicroRnaMappingQualityMetric
MicroRnaQuantificationQualityMetric
MouseDonor
MultiomicsSeries
Organism
OrganismDevelopmentSeries
Page
Pipeline
Platform
Project
Publication
PublicationData
PulseChaseTimeSeries
QualityStandard
Reference
ReferenceEpigenome
Replicate
ReplicationTimingSeries
SamtoolsFlagstatsQualityMetric
SamtoolsStatsQualityMetric
ScAtacAlignmentQualityMetric
ScAtacAnalysisQualityMetric
ScAtacCountsSummaryQualityMetric
ScAtacLibraryComplexityQualityMetric
ScAtacMultipletQualityMetric
ScAtacReadQualityMetric
ScrnaSeqCountsSummaryQualityMetric
SegwayQualityMetric
SingleCellRnaSeries
SingleCellUnit
Software
SoftwareVersion
Source
StarQualityMetric
StarSoloQualityMetric
Target
TransgenicEnhancerExperiment
Treatment
TreatmentConcentrationSeries
TreatmentTimeSeries
TrimmingQualityMetric
UcscBrowserComposite
User
WormDonor