Artigo em revista |
- Andrea S. Gigeroff; Yana Eglit; Alastair G.B. Simpson. "Characterisation and Cultivation of New Lineages of Colponemids, a
Critical Assemblage for Inferring Alveolate Evolution". Protist (2023): 125949-125949. https://dx.doi.org/10.1016/j.protis.2023.125949.
10.1016/j.protis.2023.125949
- ThankGod Ebenezer; Ross Low; Ellis C. O'Neill; I-Shuo Huang; Antonio DeSimone; Scott Farrow; Rob Field; et al. "Euglena International
Network (EIN): Driving euglenoid biotechnology for the benefit of a challenged world". Biology Open 11 11 (2022): https://dx.doi.org/10.1242/bio.059561.
10.1242/bio.059561
- Daria Tashyreva; Alastair G.B. Simpson; Galina Prokopchuk; Ingrid Škodová-Sveráková; Anzhelika Butenko; Michael Hammond; Emma
E. George; et al. "Diplonemids – A Review on "New" Flagellates on the Oceanic Block". Protist 173 2 (2022): 125868-125868.
https://dx.doi.org/10.1016/j.protis.2022.125868.
10.1016/j.protis.2022.125868
- Kiran More; Alastair G. B. Simpson; Sebastian Hess. "Description of the marine predator
Sericomyxa perlucida
gen. et sp. nov., a cultivated representative of the deepest branching lineage of vampyrellid amoebae (Vampyrellida, Rhizaria)".
Journal of Eukaryotic Microbiology 68 6 (2021): https://dx.doi.org/10.1111/jeu.12864.
10.1111/jeu.12864
- Dayana Elizabeth Salas-Leiva; Eelco Tromer; Bruce Curtis; Jon Jerlström-Hultqvist; Martin Kolisko; Zhenzhen Yi; Joan Sebastian
Salas Leiva; et al. "Genomic analysis finds no evidence of canonical eukaryotic DNA processing complexes in a free-living
protist". Nature Communications 12 1 (2021): https://dx.doi.org/10.1038/s41467-021-26077-2.
10.1038/s41467-021-26077-2
- Alexandra Eleonore Rybarski; Frank Nitsche; Jong Soo Park; Paulina Filz; Patricia Schmidt; Ryuji Kondo; Alastair GB Simpson;
Hartmut Arndt. "Revision of the phylogeny of Placididea (Stramenopiles): Molecular and morphological diversity of novel placidid
protists from extreme aquatic environments". European Journal of Protistology 81 (2021): 125809-125809. https://dx.doi.org/10.1016/j.ejop.2021.125809.
10.1016/j.ejop.2021.125809
- Aaron A. Heiss; Sally D. Warring; Kaleigh Lukacs; John Favate; Ashley Yang; Yangtsho Gyaltshen; Christopher Filardi; Alastair
G.B. Simpson; Eunsoo Kim. "Description of Imasa heleensis , gen. nov., sp. nov. (Imasidae, fam. nov.), a Deep-Branching Marine
Malawimonad and Possible Key Taxon in Understanding Early Eukaryotic Evolution". Journal of Eukaryotic Microbiology
68 2 (2021): https://doi.org/10.1111/jeu.12837.
10.1111/jeu.12837
- Lax, G.; Kolisko, M.; Eglit, Y.; Lee, W.J.; Yubuki, N.; Karnkowska, A.; Leander, B.S.; et al. "Multigene phylogenetics of
euglenids based on single-cell transcriptomics of diverse phagotrophs". Molecular Phylogenetics and Evolution 159 (2021):
https://www.scopus.com/inward/record.url?eid=2-s2.0-85101309562&partnerID=MN8TOARS.
10.1016/j.ympev.2021.107088
- Ettahi, K.; Lhee, D.; Sung, J.Y.; Simpson, A.G.B.; Park, J.S.; Yoon, H.S.. "Evolutionary History of Mitochondrial Genomes
in Discoba, Including the Extreme Halophile Pleurostomum flabellatum (Heterolobosea)". Genome biology and evolution
13 2 (2021): https://www.scopus.com/inward/record.url?eid=2-s2.0-85102222291&partnerID=MN8TOARS.
10.1093/gbe/evaa241
- Euki Yazaki; Keitaro Kume; Takashi Shiratori; Yana Eglit; Goro Tanifuji; Ryo Harada; Alastair G. B. Simpson; et al. "Barthelonids
represent a deep-branching metamonad clade with mitochondrion-related organelles predicted to generate no ATP". Proceedings
of the Royal Society B: Biological Sciences 287 1934 (2020): 20201538-20201538. https://doi.org/10.1098/rspb.2020.1538.
10.1098/rspb.2020.1538
- Lax, G.; Simpson, A.G.B.. "The Molecular Diversity of Phagotrophic Euglenids Examined Using Single-cell Methods". Protist
171 5 (2020): https://www.scopus.com/inward/record.url?eid=2-s2.0-85094096198&partnerID=MN8TOARS.
10.1016/j.protis.2020.125757
- Burki, F.; Roger, A.J.; Brown, M.W.; Simpson, A.G.B.. "The New Tree of Eukaryotes". Trends in Ecology and Evolution
35 1 (2020): 43-55. https://www.scopus.com/inward/record.url?eid=2-s2.0-85073068371&partnerID=MN8TOARS.
10.1016/j.tree.2019.08.008
- Kolisko, M.; Flegontova, O.; Karnkowska, A.; Lax, G.; Maritz, J.M.; Pánek, T.; Táborský, P.; et al. "EukRef-excavates: Seven
curated SSU ribosomal RNA gene databases". Database 2020 (2020): https://www.scopus.com/inward/record.url?eid=2-s2.0-85096814458&partnerID=MN8TOARS.
10.1093/database/baaa080
- Jeremy G. Wideman; Gordon Lax; Guy Leonard; David S. Milner; Raquel Rodríguez-Martínez; Alastair G. B. Simpson; Thomas A.
Richards. "A single-cell genome reveals diplonemid-like ancestry of kinetoplastid mitochondrial gene structure". Philosophical
Transactions of the Royal Society B: Biological Sciences 374 1786 (2019): 20190100-20190100. https://doi.org/10.1098/rstb.2019.0100.
10.1098/rstb.2019.0100
- Luis Javier Galindo; Guifré Torruella; David Moreira; Yana Eglit; Alastair G. B. Simpson; Eckhard Völcker; Steffen Clauß;
Purificación López-García. "Combined cultivation and single-cell approaches to the phylogenomics of nucleariid amoebae, close
relatives of fungi". Philosophical Transactions of the Royal Society B: Biological Sciences 374 1786 (2019): 20190094-20190094.
https://doi.org/10.1098/rstb.2019.0094.
10.1098/rstb.2019.0094
- Gordon Lax; Won Je Lee; Yana Eglit; Alastair Simpson. "Ploeotids Represent Much of the Phylogenetic Diversity of Euglenids".
Protist 170 2 (2019): 233-257. https://doi.org/10.1016/j.protis.2019.03.001.
10.1016/j.protis.2019.03.001
- Hess, S.; Eme, L.; Roger, A.J.; Simpson, A.G.B.. "A natural toroidal microswimmer with a rotary eukaryotic flagellum". Nature
Microbiology 4 10 (2019): 1620-1626. https://www.scopus.com/inward/record.url?eid=2-s2.0-85067032336&partnerID=MN8TOARS.
10.1038/s41564-019-0478-6
- Frail-Gauthier, J.L.; Mudie, P.J.; Simpson, A.G.B.; Scott, D.B.. "Mesocosm and microcosm experiments on the feeding of temperate
salt marsh foraminifera". Journal of Foraminiferal Research 49 3 (2019): 259-274. https://www.scopus.com/inward/record.url?eid=2-s2.0-85071194343&partnerID=MN8TOARS.
10.2113/gsjfr.49.3.259
- Tikhonenkov, D.V.; Jhin, S.H.; Eglit, Y.; Miller, K.; Plotnikov, A.; Simpson, A.G.B.; Park, S.. "Ecological and evolutionary
patterns in the enigmatic protist genus Percolomonas (Heterolobosea; Discoba) from diverse habitats". PLoS ONE 14 8
(2019): https://www.scopus.com/inward/record.url?eid=2-s2.0-85071399926&partnerID=MN8TOARS.
10.1371/journal.pone.0216188
- More, K.; Simpson, A.G.B.; Hess, S.. "Two New Marine Species of Placopus (Vampyrellida, Rhizaria) That Perforate the Theca
of Tetraselmis (Chlorodendrales, Viridiplantae)". Journal of Eukaryotic Microbiology 66 4 (2019): 560-573. https://www.scopus.com/inward/record.url?eid=2-s2.0-85057140047&partnerID=MN8TOARS.
10.1111/jeu.12698
- Joshua D. Goodwin; Thomas F. Lee; Paul Kugrens; Alastair G.B. Simpson. "Allobodo chlorophagus n. gen. n. sp., a Kinetoplastid
that Infiltrates and Feeds on the Invasive Alga Codium fragile". Protist 169 6 (2018): 911-925. https://doi.org/10.1016/j.protis.2018.07.001.
10.1016/j.protis.2018.07.001
- Aaron A. Heiss; Martin Kolisko; Fleming Ekelund; Matthew W. Brown; Andrew J. Roger; Alastair G. B. Simpson. "Combined morphological
and phylogenomic re-examination of malawimonads, a critical taxon for inferring the evolutionary history of eukaryotes". Royal
Society Open Science 5 4 (2018): 171707-171707. https://doi.org/10.1098/rsos.171707.
10.1098/rsos.171707
- Buchwald, R.; Scheibling, R.E.; Simpson, A.G.B.. "Detection and quantification of a keystone pathogen in a coastal marine
ecosystem". Marine Ecology Progress Series 606 (2018): 79-90. https://www.scopus.com/inward/record.url?eid=2-s2.0-85056842451&partnerID=MN8TOARS.
10.3354/meps12776
- Harding, T.; Simpson, A.G.B.. "Recent Advances in Halophilic Protozoa Research". Journal of Eukaryotic Microbiology
65 4 (2018): 556-570. https://www.scopus.com/inward/record.url?eid=2-s2.0-85044575019&partnerID=MN8TOARS.
10.1111/jeu.12495
- Brown, M.W.; Heiss, A.A.; Kamikawa, R.; Inagaki, Y.; Yabuki, A.; Tice, A.K.; Shiratori, T.; et al. "Phylogenomics Places Orphan
Protistan Lineages in a Novel Eukaryotic Super-Group". Genome Biology and Evolution 10 2 (2018): 427-433. https://www.scopus.com/inward/record.url?eid=2-s2.0-85043236058&partnerID=MN8TOARS.
10.1093/gbe/evy014
- del Campo, J.; Kolisko, M.; Boscaro, V.; Santoferrara, L.F.; Nenarokov, S.; Massana, R.; Guillou, L.; et al. "EukRef: Phylogenetic
curation of ribosomal RNA to enhance understanding of eukaryotic diversity and distribution". PLoS Biology 16 9 (2018):
https://www.scopus.com/inward/record.url?eid=2-s2.0-85054785575&partnerID=MN8TOARS.
10.1371/journal.pbio.2005849
- Lax, G.; Eglit, Y.; Eme, L.; Bertrand, E.M.; Roger, A.J.; Simpson, A.G.B.. "Hemimastigophora is a novel supra-kingdom-level
lineage of eukaryotes". Nature 564 7736 (2018): 410-414. https://www.scopus.com/inward/record.url?eid=2-s2.0-85058872993&partnerID=MN8TOARS.
10.1038/s41586-018-0708-8
- Harding, T.; Roger, A.J.; Simpson, A.G.B.. "Adaptations to high salt in a halophilic protist: Differential expression and
gene acquisitions through duplications and gene transfers". Frontiers in Microbiology 8 MAY (2017): https://www.scopus.com/inward/record.url?eid=2-s2.0-85019735760&partnerID=MN8TOARS.
10.3389/fmicb.2017.00944
- Berney, C.; Ciuprina, A.; Bender, S.; Brodie, J.; Edgcomb, V.; Kim, E.; Rajan, J.; et al. "UniEuk: Time to Speak a Common
Language in Protistology!". Journal of Eukaryotic Microbiology 64 3 (2017): 407-411. https://www.scopus.com/inward/record.url?eid=2-s2.0-85018536513&partnerID=MN8TOARS.
10.1111/jeu.12414
- Yang, J.; Harding, T.; Kamikawa, R.; Simpson, A.G.B.; Roger, A.J.. "Mitochondrial genome evolution and a novel RNA editing
system in deep-branching heteroloboseids". Genome Biology and Evolution 9 5 (2017): 1161-1174. https://www.scopus.com/inward/record.url?eid=2-s2.0-85026628611&partnerID=MN8TOARS.
10.1093/gbe/evx086
- Leger, M.M.; Kolisko, M.; Kamikawa, R.; Stairs, C.W.; Kume, K.; Cepicka, I.; Silberman, J.D.; et al. "Organelles that illuminate
the origins of Trichomonas hydrogenosomes and Giardia mitosomes". Nature Ecology and Evolution 1 4 (2017): https://www.scopus.com/inward/record.url?eid=2-s2.0-85029914924&partnerID=MN8TOARS.
10.1038/s41559-017-0092
- Xu, F.; Jerlström-Hultqvist, J.; Kolisko, M.; Simpson, A.G.B.; Roger, A.J.; Svärd, S.G.; Andersson, J.O.. "On the reversibility
of parasitism: Adaptation to a free-living lifestyle via gene acquisitions in the diplomonad Trepomonas sp. PC1". BMC Biology
14 1 (2016): https://www.scopus.com/inward/record.url?eid=2-s2.0-84979687755&partnerID=MN8TOARS.
10.1186/s12915-016-0284-z
- Harding, T.; Brown, M.W.; Simpson, A.G.B.; Roger, A.J.. "Osmoadaptative strategy and its molecular signature in obligately
halophilic heterotrophic protists". Genome Biology and Evolution 8 7 (2016): 2241-2258. https://www.scopus.com/inward/record.url?eid=2-s2.0-85015647587&partnerID=MN8TOARS.
10.1093/gbe/evw152
- Park, J.S.; Simpson, A.G.B.. "Characterization of a Deep-Branching Heterolobosean, Pharyngomonas turkanaensis n. Sp., Isolated
from a Non-Hypersaline Habitat, and Ultrastructural Comparison of Cysts and Amoebae among Pharyngomonas Strains". Journal
of Eukaryotic Microbiology 63 1 (2016): 100-111. https://www.scopus.com/inward/record.url?eid=2-s2.0-84954074982&partnerID=MN8TOARS.
10.1111/jeu.12260
- Novák, L.; Zubácová, Z.; Karnkowska, A.; Kolisko, M.; Hroudová, M.; Stairs, C.W.; Simpson, A.G.B.; et al. "Arginine deiminase
pathway enzymes: evolutionary history in metamonads and other eukaryotes". BMC Evolutionary Biology 16 1 (2016): 1-14.
https://www.scopus.com/inward/record.url?eid=2-s2.0-84991058726&partnerID=MN8TOARS.
10.1186/s12862-016-0771-4
- Park, J.S.; Simpson, A.G.B.. "Diversity of Heterotrophic Protists from Extremely Hypersaline Habitats". Protist 166
4 (2015): 422-437. https://www.scopus.com/inward/record.url?eid=2-s2.0-84937135179&partnerID=MN8TOARS.
10.1016/j.protis.2015.06.001
- Zhang, Q.; Táborský, P.; Silberman, J.D.; Pánek, T.; Cepicka, I.; Simpson, A.G.B.. "Marine Isolates of Trimastix marina Form
a Plesiomorphic Deep-branching Lineage within Preaxostyla, Separate from Other Known Trimastigids (Paratrimastix n. gen.)".
Protist 166 4 (2015): 468-491. https://www.scopus.com/inward/record.url?eid=2-s2.0-84939788947&partnerID=MN8TOARS.
10.1016/j.protis.2015.07.003
- Kirby, W.A.; Tikhonenkov, D.V.; Mylnikov, A.P.; Janouškovec, J.; Lax, G.; Simpson, A.G.B.. "Characterization of Tulamoeba
bucina n. sp., an extremely halotolerant amoeboflagellate heterolobosean belonging to the Tulamoeba-Pleurostomum clade (Tulamoebidae
n. fam.)". Journal of Eukaryotic Microbiology 62 2 (2015): 227-238. https://www.scopus.com/inward/record.url?eid=2-s2.0-84924021614&partnerID=MN8TOARS.
10.1111/jeu.12172
- Heiss, A.A.; Lee, W.J.; Ishida, K.-I.; Simpson, A.G.B.. "Cultivation and characterisation of new species of apusomonads (the
sister group to opisthokonts), including close relatives of Thecamonas (Chelonemonas n. gen.)". Journal of Eukaryotic Microbiology
62 5 (2015): 637-649. https://www.scopus.com/inward/record.url?eid=2-s2.0-84941175296&partnerID=MN8TOARS.
10.1111/jeu.12220
- Buchwald, R.T.; Feehan, C.J.; Scheibling, R.E.; Simpson, A.G.B.. "Low temperature tolerance of a sea urchin pathogen: Implications
for benthic community dynamics in a warming ocean". Journal of Experimental Marine Biology and Ecology 469 (2015):
1-9. https://www.scopus.com/inward/record.url?eid=2-s2.0-84928227400&partnerID=MN8TOARS.
10.1016/j.jembe.2015.04.006
- Lee, W.J.; Miller, K.; Simpson, A.G.B.. "Morphological and molecular characterization of a new species of Stephanopogon, Stephanopogon
pattersoni n. sp.". Journal of Eukaryotic Microbiology 61 4 (2014): 389-398. https://www.scopus.com/inward/record.url?eid=2-s2.0-84903879426&partnerID=MN8TOARS.
10.1111/jeu.12124
- Lee, W.J.; Simpson, A.G.B.. "Ultrastructure and molecular phylogenetic position of Neometanema parovale sp. nov. (Neometanema
gen. nov.), a marine phagotrophic euglenid with skidding motility". Protist 165 4 (2014): 452-472. https://www.scopus.com/inward/record.url?eid=2-s2.0-84902490347&partnerID=MN8TOARS.
10.1016/j.protis.2014.05.001
- Pánek, T.; Simpson, A.G.B.; Hampl, V.; Cepicka, I.. "Creneis carolina gen. et sp. nov. (Heterolobosea), a Novel Marine Anaerobic
Protist with Strikingly Derived Morphology and Life Cycle". Protist 165 4 (2014): 542-567. https://www.scopus.com/inward/record.url?eid=2-s2.0-84903765561&partnerID=MN8TOARS.
10.1016/j.protis.2014.05.005
- Keeling, P.J.; Burki, F.; Wilcox, H.M.; Allam, B.; Allen, E.E.; Amaral-Zettler, L.A.; Armbrust, E.V.; et al. "The Marine Microbial
Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans
through Transcriptome Sequencing". PLoS Biology 12 6 (2014): https://www.scopus.com/inward/record.url?eid=2-s2.0-84903286893&partnerID=MN8TOARS.
10.1371/journal.pbio.1001889
- Lee, W.J.; Simpson, A.G.B.. "Morphological and molecular characterisation of notosolenus urceolatus Larsen and Patterson 1990,
a member of an understudied deep-branching Euglenid group (Petalomonads)". Journal of Eukaryotic Microbiology 61 5
(2014): 463-479. https://www.scopus.com/inward/record.url?eid=2-s2.0-84930064642&partnerID=MN8TOARS.
10.1111/jeu.12126
- Brown MW; Sharpe SC; Silberman JD; Heiss AA; Lang BF; Simpson AG; Roger AJ. "Phylogenomics demonstrates that breviate flagellates
are related to opisthokonts and apusomonads.". (2013): https://europepmc.org/abstract/med/23986111.
10.1098/rspb.2013.1755
- Heiss AA; Walker G; Simpson AG. "The microtubular cytoskeleton of the apusomonad Thecamonas, a sister lineage to the opisthokonts.".
(2013): https://europepmc.org/abstract/med/23872341.
10.1016/j.protis.2013.05.005
- Heiss AA; Walker G; Simpson AG. "The flagellar apparatus of Breviata anathema, a eukaryote without a clear supergroup affinity.".
(2013): https://europepmc.org/abstract/med/23523042.
10.1016/j.ejop.2013.01.001
- Yubuki N; Simpson AG; Leander BS. "Comprehensive ultrastructure of Kipferlia bialata provides evidence for character evolution
within the Fornicata (Excavata).". (2013): https://europepmc.org/abstract/med/23517666.
10.1016/j.protis.2013.02.002
- Feehan CJ; Johnson-Mackinnon J; Scheibling RE; Lauzon-Guay JS; Simpson AG. "Validating the identity of Paramoeba invadens,
the causative agent of recurrent mass mortality of sea urchins in Nova Scotia, Canada.". (2013): https://europepmc.org/abstract/med/23574707.
10.3354/dao02577
- Harding T; Brown MW; Plotnikov A; Selivanova E; Park JS; Gunderson JH; Baumgartner M; et al. "Amoeba stages in the deepest
branching heteroloboseans, including Pharyngomonas: evolutionary and systematic implications.". (2013): https://europepmc.org/abstract/med/23021907.
10.1016/j.protis.2012.08.002
- Yubuki N; Simpson AG; Leander BS. "Reconstruction of the feeding apparatus in Postgaardi mariagerensis provides evidence for
character evolution within the Symbiontida (Euglenozoa).". (2013): https://europepmc.org/abstract/med/22925570.
10.1016/j.ejop.2012.07.001
- Kamikawa R; Brown MW; Nishimura Y; Sako Y; Heiss AA; Yubuki N; Gawryluk R; et al. "Parallel re-modeling of EF-1a function:
divergent EF-1a genes co-occur with EFL genes in diverse distantly related eukaryotes.". (2013): https://europepmc.org/abstract/med/23800323.
10.1186/1471-2148-13-131
- Lax G; Simpson AG. "Combining molecular data with classical morphology for uncultured phagotrophic euglenids (Excavata): a
single-cell approach.". (2013): https://europepmc.org/abstract/med/23879661.
10.1111/jeu.12068
- O'Malley, M.A.; Simpson, A.G.B.; Roger, A.J.. "The other eukaryotes in light of evolutionary protistology". Biology and
Philosophy 28 2 (2013): 299-330. https://www.scopus.com/inward/record.url?eid=2-s2.0-84874564291&partnerID=MN8TOARS.
10.1007/s10539-012-9354-y
- Adl SM; Simpson AG; Lane CE; Lukeš J; Bass D; Bowser SS; Brown MW; et al. "The revised classification of eukaryotes.". (2012):
https://europepmc.org/abstract/med/23020233.
10.1111/j.1550-7408.2012.00644.x
- Zhang Q; Simpson A; Song W. "Insights into the phylogeny of systematically controversial haptorian ciliates (Ciliophora, Litostomatea)
based on multigene analyses.". (2012): https://europepmc.org/abstract/med/22378805.
10.1098/rspb.2011.2688
- Takishita K; Kolisko M; Komatsuzaki H; Yabuki A; Inagaki Y; Cepicka I; Smejkalová P; et al. "Multigene phylogenies of diverse
Carpediemonas-like organisms identify the closest relatives of 'amitochondriate' diplomonads and retortamonads.". (2012):
https://europepmc.org/abstract/med/22364773.
10.1016/j.protis.2011.12.007
- Pawlowski J; Audic S; Adl S; Bass D; Belbahri L; Berney C; Bowser SS; et al. "CBOL protist working group: barcoding eukaryotic
richness beyond the animal, plant, and fungal kingdoms.". (2012): https://europepmc.org/abstract/med/23139639.
10.1371/journal.pbio.1001419
- Park JS; De Jonckheere JF; Simpson AG. "Characterization of Selenaion koniopes n. gen., n. sp., an amoeba that represents
a new major lineage within heterolobosea, isolated from the Wieliczka salt mine.". (2012): https://europepmc.org/abstract/med/22888835.
10.1111/j.1550-7408.2012.00641.x
- Park JS; Simpson AG. "Characterization of Pharyngomonas kirbyi (= "Macropharyngomonas halophila" nomen nudum), a very deep-branching,
obligately halophilic heterolobosean flagellate.". (2011): https://europepmc.org/abstract/med/21723194.
10.1016/j.protis.2011.05.004
- Mora C; Tittensor DP; Adl S; Simpson AG; Worm B. "How many species are there on Earth and in the ocean?". (2011): https://europepmc.org/abstract/med/21886479.
10.1371/journal.pbio.1001127
- Heiss AA; Walker G; Simpson AG. "The ultrastructure of Ancyromonas, a eukaryote without supergroup affinities.". (2011): https://europepmc.org/abstract/med/21420357.
10.1016/j.protis.2010.08.004
- Tong J; Dolezal P; Selkrig J; Crawford S; Simpson AG; Noinaj N; Buchanan SK; Gabriel K; Lithgow T. "Ancestral and derived
protein import pathways in the mitochondrion of Reclinomonas americana.". (2011): https://europepmc.org/abstract/med/21081480.
10.1093/molbev/msq305
- Kolisko M; Silberman JD; Cepicka I; Yubuki N; Takishita K; Yabuki A; Leander BS; et al. "A wide diversity of previously undetected
free-living relatives of diplomonads isolated from marine/saline habitats.". (2010): https://europepmc.org/abstract/med/20482740.
10.1111/j.1462-2920.2010.02239.x
- Kim E; Park JS; Simpson AG; Matsunaga S; Watanabe M; Murakami A; Sommerfeld K; Onodera NT; Archibald JM. "Complex array of
endobionts in Petalomonas sphagnophila, a large heterotrophic euglenid protist from Sphagnum-dominated peatlands.". (2010):
https://europepmc.org/abstract/med/20376101.
10.1038/ismej.2010.40
- Park JS; Simpson AG. "Characterization of halotolerant Bicosoecida and Placididea (Stramenopila) that are distinct from marine
forms, and the phylogenetic pattern of salinity preference in heterotrophic stramenopiles.". (2010): https://europepmc.org/abstract/med/20132281.
10.1111/j.1462-2920.2010.02158.x
- Wilson, S.L.; Simpson, A.G.B.; Lynn, D.H.. "Maintaining journal figure quality". Journal of Eukaryotic Microbiology
57 3 (2010): 221-222. https://www.scopus.com/inward/record.url?eid=2-s2.0-77951558946&partnerID=MN8TOARS.
10.1111/j.1550-7408.2010.00478.x
- Heiss AA; Walker G; Simpson AG. "Clarifying the taxonomic identity of a phylogenetically important group of eukaryotes: Planomonas
is a junior synonym of Ancyromonas.". (2010): https://europepmc.org/abstract/med/20384907.
10.1111/j.1550-7408.2010.00477.x
- Park JS; Kolisko M; Simpson AG. "Cell morphology and formal description of Ergobibamus cyprinoides n. g., n. sp., another
Carpediemonas-like relative of diplomonads.". (2010): https://europepmc.org/abstract/med/20880032.
10.1111/j.1550-7408.2010.00506.x
- Park JS; Simpson AG; Brown S; Cho BC. "Ultrastructure and molecular phylogeny of two heterolobosean amoebae, Euplaesiobystra
hypersalinica gen. et sp. nov. and Tulamoeba peronaphora gen. et sp. nov., isolated from an extremely hypersaline habitat.".
(2009): https://europepmc.org/abstract/med/19121603.
10.1016/j.protis.2008.10.002
- Hampl V; Hug L; Leigh JW; Dacks JB; Lang BF; Simpson AG; Roger AJ. "Phylogenomic analyses support the monophyly of Excavata
and resolve relationships among eukaryotic "supergroups".". (2009): https://europepmc.org/abstract/med/19237557.
10.1073/pnas.0807880106
- Roger AJ; Simpson AG. "Evolution: revisiting the root of the eukaryote tree.". (2009): https://europepmc.org/abstract/med/19243692.
10.1016/j.cub.2008.12.032
- Park JS; Kolisko M; Heiss AA; Simpson AG. "Light microscopic observations, ultrastructure, and molecular phylogeny of Hicanonectes
teleskopos n. g., n. sp., a deep-branching relative of diplomonads.". (2009): https://europepmc.org/abstract/med/19602083.
10.1111/j.1550-7408.2009.00412.x
- Lynn DH; Simpson AG. "From the editors: describing new taxa of unicellular protists.". (2009): https://europepmc.org/abstract/med/19737191.
10.1111/j.1550-7408.2009.00440.x
- Simpson AG; Perley TA; Lara E. "Lateral transfer of the gene for a widely used marker, alpha-tubulin, indicated by a multi-protein
study of the phylogenetic position of Andalucia (Excavata).". (2008): https://europepmc.org/abstract/med/18226931.
10.1016/j.ympev.2007.11.035
- Sanchez-Perez GF; Hampl V; Simpson AG; Roger AJ. "A new divergent type of eukaryotic methionine adenosyltransferase is present
in multiple distantly related secondary algal lineages.". (2008): https://europepmc.org/abstract/med/19017057.
10.1111/j.1550-7408.2008.00349.x
- Kolisko M; Cepicka I; Hampl V; Leigh J; Roger AJ; Kulda J; Simpson AG; Flegr J. "Molecular phylogeny of diplomonads and enteromonads
based on SSU rRNA, alpha-tubulin and HSP90 genes: implications for the evolutionary history of the double karyomastigont of
diplomonads.". (2008): https://europepmc.org/abstract/med/18627633.
10.1186/1471-2148-8-205
- Adl SM; Leander BS; Simpson AG; Archibald JM; Anderson OR; Bass D; Bowser SS; et al. "Diversity, nomenclature, and taxonomy
of protists.". (2007): https://europepmc.org/abstract/med/17661235.
10.1080/10635150701494127
- Park JS; Simpson AG; Lee WJ; Cho BC. "Ultrastructure and phylogenetic placement within Heterolobosea of the previously unclassified,
extremely halophilic heterotrophic flagellate Pleurostomum flabellatum (Ruinen 1938).". (2007): https://europepmc.org/abstract/med/17576098.
10.1016/j.protis.2007.03.004
- Park JS; Cho BC; Simpson AG. "Halocafeteria seosinensis gen. et sp. nov. (Bicosoecida), a halophilic bacterivorous nanoflagellate
isolated from a solar saltern.". (2006): https://europepmc.org/abstract/med/16874468.
10.1007/s00792-006-0001-x
- Kim E; Simpson AG; Graham LE. "Evolutionary relationships of apusomonads inferred from taxon-rich analyses of 6 nuclear encoded
genes.". (2006): https://europepmc.org/abstract/med/16982820.
10.1093/molbev/msl120
- Simpson AG; Stevens JR; Lukes J. "The evolution and diversity of kinetoplastid flagellates.". (2006): https://europepmc.org/abstract/med/16504583.
10.1016/j.pt.2006.02.006
- Simpson AG; Inagaki Y; Roger AJ. "Comprehensive multigene phylogenies of excavate protists reveal the evolutionary positions
of "primitive" eukaryotes.". (2006): https://europepmc.org/abstract/med/16308337.
10.1093/molbev/msj068
- Lara E; Chatzinotas A; Simpson AG. "Andalucia (n. gen.)--the deepest branch within jakobids (Jakobida; Excavata), based on
morphological and molecular study of a new flagellate from soil.". (2006): https://europepmc.org/abstract/med/16579813.
10.1111/j.1550-7408.2005.00081.x
- Simpson AG. "Evolution downunder: meeting report for the 15th Meeting of the International Society for Evolutionary Protistology
(ISEP XV).". (2005): https://europepmc.org/abstract/med/16171182.
10.1016/j.protis.2005.05.002
- Miao W; Simpson AG; Fu C; Lobban CS. "The giant zooxanthellae-bearing ciliate Maristentor dinoferus (Heterotrichea) is closely
related to folliculinidae.". (2005): https://europepmc.org/abstract/med/15702974.
10.1111/j.1550-7408.2005.3311r.x
- Adl SM; Simpson AG; Farmer MA; Andersen RA; Anderson OR; Barta JR; Bowser SS; et al. "The new higher level classification
of eukaryotes with emphasis on the taxonomy of protists.". (2005): https://europepmc.org/abstract/med/16248873.
10.1111/j.1550-7408.2005.00053.x
- Lee, W.J.; Simpson, A.G.B.; Patterson, D.J.. "Free-living heterotrophic flagellates from freshwater sites in Tasmania (Australia),
a field survey". Acta Protozoologica 44 4 (2005): 321-350. https://www.scopus.com/inward/record.url?eid=2-s2.0-27844436589&partnerID=MN8TOARS.
- Simpson AG; Gill EE; Callahan HA; Litaker RW; Roger AJ. "Early evolution within kinetoplastids (euglenozoa), and the late
emergence of trypanosomatids.". (2004): https://europepmc.org/abstract/med/15648721.
10.1078/1434461042650389
- Simpson AG; Roger AJ. "The real 'kingdoms' of eukaryotes.". (2004): https://europepmc.org/abstract/med/15341755.
10.1016/j.cub.2004.08.038
- Inagaki Y; Simpson A; Dacks J; Roger A. "Phylogenetic artifacts can be caused by leucine, serine, and arginine codon usage
heterogeneity: dinoflagellate plastid origins as a case study.". (2004): https://europepmc.org/abstract/med/15371248.
10.1080/10635150490468756
- Simpson AG; Roger AJ. "Protein phylogenies robustly resolve the deep-level relationships within Euglenozoa.". (2004): https://europepmc.org/abstract/med/15022770.
10.1016/S1055-7903(03)00177-5
- Brugerolle G; Simpson AG. "The flagellar apparatus of heteroloboseans.". (2004): https://europepmc.org/abstract/med/15068271.
10.1111/j.1550-7408.2004.tb00169.x
- Simpson AG. "Cytoskeletal organization, phylogenetic affinities and systematics in the contentious taxon Excavata (Eukaryota).".
(2003): https://europepmc.org/abstract/med/14657103.
10.1099/ijs.0.02578-0
- Dacks JB; Simpson AG. "Meeting report: XIVth meeting of the International Society for Evolutionary Protistology, Vancouver,
Canada, June 19-24, 2002.". (2002): https://europepmc.org/abstract/med/12627863.
10.1078/14344610260450064
- Simpson AG; Lukes J; Roger AJ. "The evolutionary history of kinetoplastids and their kinetoplasts.". (2002): https://europepmc.org/abstract/med/12446799.
- Simpson AG; Roger AJ. "Eukaryotic evolution: getting to the root of the problem.". (2002): https://europepmc.org/abstract/med/12401185.
10.1016/S0960-9822(02)01207-1
- Simpson AG; Roger AJ; Silberman JD; Leipe DD; Edgcomb VP; Jermiin LS; Patterson DJ; Sogin ML. "Evolutionary history of "early-diverging"
eukaryotes: the excavate taxon Carpediemonas is a close relative of Giardia.". (2002): https://europepmc.org/abstract/med/12270904.
- Simpson AG; MacQuarrie EK; Roger AJ. "Eukaryotic evolution: early origin of canonical introns.". (2002): https://europepmc.org/abstract/med/12239559.
10.1038/419270a
- Edgcomb VP; Simpson AG; Zettler LA; Nerad TA; Patterson DJ; Holder ME; Sogin ML. "Pelobionts are degenerate protists: insights
from molecules and morphology.". (2002): https://europepmc.org/abstract/med/12032256.
- Silberman JD; Simpson AG; Kulda J; Cepicka I; Hampl V; Johnson PJ; Roger AJ. "Retortamonad flagellates are closely related
to diplomonads--implications for the history of mitochondrial function in eukaryote evolution.". (2002): https://europepmc.org/abstract/med/11961110.
- Simpson, A.G.B.; Roger, A.J.; Silberman, J.D.; Leipe, D.D.; Edgcomb, V.P.; Jermiin, L.S.; Patterson, D.J.; Sogin, M.L.. "Evolutionary
history of "early-diverging" eukaryotes: The excavate taxon Carpediemonas is a close relative of Giardia". Molecular Biology
and Evolution 19 10 (2002): 1782-1791. https://www.scopus.com/inward/record.url?eid=2-s2.0-0036791132&partnerID=MN8TOARS.
10.1093/oxfordjournals.molbev.a004000
- Edgcomb, V.P.; Simpson, A.G.B.; Zettler, L.A.; Nerad, T.A.; Patterson, D.J.; Holder, M.E.; Sogin, M.L.. "Pelobionts are degenerate
protists: Insights from molecules and morphology [5]". Molecular Biology and Evolution 19 6 (2002): 978-982. https://www.scopus.com/inward/record.url?eid=2-s2.0-0036275724&partnerID=MN8TOARS.
10.1093/oxfordjournals.molbev.a004157
- Simpson, A.G.B.; Lukeš, J.; Roger, A.J.. "The evolutionary history of kinetoplastids and their kinetoplasts". Molecular
Biology and Evolution 19 12 (2002): 2071-2083. https://www.scopus.com/inward/record.url?eid=2-s2.0-0036900271&partnerID=MN8TOARS.
10.1093/oxfordjournals.molbev.a004032
- Simpson AG; Radek R; Dacks JB; O'Kelly CJ. "How oxymonads lost their groove: an ultrastructural comparison of Monocercomonoides
and excavate taxa.". (2002): https://europepmc.org/abstract/med/12120989.
10.1111/j.1550-7408.2002.tb00529.x
- Silberman, J.D.; Simpson, A.G.B.; Kulda, J.; Cepicka, I.; Hampl, V.; Johnson, P.J.; Roger, A.J.. "Retortamonad flagellates
are closely related to diplomonads - Implications for the history of mitochondrial function in eukaryote evolution". Molecular
Biology and Evolution 19 5 (2002): 777-786. https://www.scopus.com/inward/record.url?eid=2-s2.0-0036095568&partnerID=MN8TOARS.
10.1093/oxfordjournals.molbev.a004135
- Al-Qassab, S.; Lee, W.J.; Murray, S.; Simpson, A.G.B.; Patterson, D.J.. "Flagellates from stromatolites and surrounding sediments
in Shark Bay, Western Australia". Acta Protozoologica 41 2 (2002): 91-144. https://www.scopus.com/inward/record.url?eid=2-s2.0-0036284995&partnerID=MN8TOARS.
- Lobban, C.S.; Schefter, M.; Simpson, A.G.B.; Pochon, X.; Pawlowski, J.; Foissner, W.. "Maristentor dinoferus n. gen., n. sp.,
a giant heterotrich ciliate (Spirotrichea: Heterotrichida) with zooxanthellae, from coral reefs on Guam, Mariana Islands".
Marine Biology 140 2 (2002): 411-423. https://www.scopus.com/inward/record.url?eid=2-s2.0-0036934570&partnerID=MN8TOARS.
10.1007/s002270100690
- Dacks, J.B.; Silberman, J.D.; Simpson, A.G.B.; Moriya, S.; Kudo, T.; Ohkuma, M.; Redfield, R.J.. "Oxymonads are closely related
to the excavate taxon Trimastix". Molecular Biology and Evolution 18 6 (2001): 1034-1044. https://www.scopus.com/inward/record.url?eid=2-s2.0-0034989519&partnerID=MN8TOARS.
10.1093/oxfordjournals.molbev.a003875
- Walker, G.; Simpson, A.G.B.; Edgcomb, V.; Sogin, M.L.; Patterson, D.J.. "Ultrastructural identities of Mastigamoeba punctachora,
Mastigamoeba simplex and Mastigella commutans and assessment of hypotheses of relatedness of the pelobionts (Protista)". European
Journal of Protistology 37 1 (2001): 25-49. https://www.scopus.com/inward/record.url?eid=2-s2.0-0035015189&partnerID=MN8TOARS.
10.1078/0932-4739-00780
- Simpson, A.G.B.; Patterson, D.J.. "On core jakobids and excavate taxa: The ultrastructure of Jakoba incarcerata". Journal
of Eukaryotic Microbiology 48 4 (2001): 480-492. https://www.scopus.com/inward/record.url?eid=2-s2.0-0034932136&partnerID=MN8TOARS.
10.1111/j.1550-7408.2001.tb00183.x
- Edgcomb, V.P.; Roger, A.J.; Simpson, A.G.B.; Kysela, D.T.; Sogin, M.L.. "Evolutionary relationships among "jakobid" flagellates
as indicated by alpha- and beta-tubulin phylogenies". Molecular Biology and Evolution 18 4 (2001): 514-522. https://www.scopus.com/inward/record.url?eid=2-s2.0-0035063264&partnerID=MN8TOARS.
10.1093/oxfordjournals.molbev.a003830
- Buck, K.R.; Barry, J.P.; Simpson, A.G.B.. "Monterey Bay cold seep biota: Euglenozoa with chemoautotrophic bacterial epibionts".
European Journal of Protistology 36 2 (2000): 117-126. https://www.scopus.com/inward/record.url?eid=2-s2.0-0034738449&partnerID=MN8TOARS.
10.1016/S0932-4739(00)80029-2
- Bernard, C.; Simpson, A.G.B.; Patterson, D.J.. "Some free-living flagellates (protista) from anoxic habitats". Ophelia
52 2 (2000): 113-142. https://www.scopus.com/inward/record.url?eid=2-s2.0-0034130551&partnerID=MN8TOARS.
10.1080/00785236.1999.10409422
- Simpson, A.G.B.; Bernard, C.; Patterson, D.J.. "The ultrastructure of Trimastix marina kent, 1880 (Eukaryota), an excavate
flagellate". European Journal of Protistology 36 3 (2000): 229-251. https://www.scopus.com/inward/record.url?eid=2-s2.0-0034714883&partnerID=MN8TOARS.
10.1016/S0932-4739(00)80001-2
- Weerakoon, N.D.; Harper, J.D.I.; Simpson, A.G.B.; Patterson, D.J.. "Centrin in the groove: Immunolocalisation of centrin and
microtubules in the putatively primitive protist Chilomastix cuspidata (Retortamonadida)". Protoplasma 210 1-2 (1999):
75-84. https://www.scopus.com/inward/record.url?eid=2-s2.0-0033374954&partnerID=MN8TOARS.
10.1007/BF01314957
- Patterson, D.J.; Simpson, A.G.B.; Weerakoon, N.. "Free-living flagellates from anoxic habitats and the assembly of the eukaryotic
cell". Biological Bulletin 196 3 (1999): 381-384. https://www.scopus.com/inward/record.url?eid=2-s2.0-0032995752&partnerID=MN8TOARS.
10.2307/1542975
- Simpson, A.G.B.; Patterson, D.J.. "The ultrastructure of Carpediemonas membranifera (Eukaryota) with reference to the 'excavate
hypothesis'". European Journal of Protistology 35 4 (1999): 353-370. https://www.scopus.com/inward/record.url?eid=2-s2.0-0033619980&partnerID=MN8TOARS.
10.1016/S0932-4739(99)80044-3
- Edgcomb, V.; Viscogliosi, E.; Simpson, A.G.B.; Delgado-Viscogliosi, P.; Roger, A.J.; Sogin, M.L.. "New insights into the phylogeny
of trichomonads inferred from small subunit rRNA sequences". Protist 149 4 (1998): 359-366. https://www.scopus.com/inward/record.url?eid=2-s2.0-0032408255&partnerID=MN8TOARS.
10.1016/S1434-4610(98)70042-2
- Simpson, A.G.B.; Bernard, C.; Fenchel, T.; Patterson, D.J.. "The organisation of Mastigamoeba schizophrenia n. sp.: More evidence
of ultrastructural idiosyncrasy and simplicity in pelobiont protists". European Journal of Protistology 33 1 (1997):
87-98. https://www.scopus.com/inward/record.url?eid=2-s2.0-0030944830&partnerID=MN8TOARS.
10.1016/S0932-4739(97)80024-7
- Simpson, A.G.B.. "The identity and composition of the Euglenozoa". Archiv fur Protistenkunde 148 3 (1997): 318-328.
https://www.scopus.com/inward/record.url?eid=2-s2.0-0030666484&partnerID=MN8TOARS.
10.1016/S0003-9365(97)80012-7
- Simpson, A.G.B.; Van Den Hopp, J.; Bernard, C.; Burton, H.R.; Patterson, D.J.. "The ultrastructure and systematic position
of the euglenozoon postgaardi mariagerensis". Archiv fur Protistenkunde 147 3-4 (1997): 213-225. https://www.scopus.com/inward/record.url?eid=2-s2.0-0030794609&partnerID=MN8TOARS.
10.1016/S0003-9365(97)80049-8
- Bernard, C.; Simpson, A.G.B.; Patterson, D.J.. "An ultrastructural study of a free-living retortamonad, Chilomastix cuspidata
(Larsen and Patterson, 1990) n. comb. (Retortamonadida, protista)". European Journal of Protistology 33 3 (1997): 254-265.
https://www.scopus.com/inward/record.url?eid=2-s2.0-0030772059&partnerID=MN8TOARS.
10.1016/S0932-4739(97)80003-X
- Patterson, D.J.; Simpson, A.G.B.. "Heterotrophic flagellates from coastal marine and hypersaline sediments in Western Australia".
European Journal of Protistology 32 4 (1996): 423-448. https://www.scopus.com/inward/record.url?eid=2-s2.0-0030478613&partnerID=MN8TOARS.
10.1016/S0932-4739(96)80003-4
- Simpson, A.G.B.; Patterson, D.J.. "Ultrastructure and identification of the predatory flagellate Colpodella pugnax Cienkowski
(Apicomplexa) with a description of Colpodella turpis n. sp. and a review of the genus". Systematic Parasitology 33
3 (1996): 187-198. https://www.scopus.com/inward/record.url?eid=2-s2.0-0000048925&partnerID=MN8TOARS.
10.1007/BF01531200
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