11/5/2024
| Modification types abbreviations... |
|
REBASE Methylation Sensitivity 11/5/2024
|
|
| Isoschizomers showing differential sensitivity |
| ACCGGT | Cut | Impaired | Blocked |
m5
A C C G G T
T G G C C A
m5
|
CspAI  |
AgeI BshTI |
|
| ACCWGGT | Cut | Impaired | Blocked |
m5
A C C W G G T
T G G W C C A
m5
|
MabI |
SexAI |
|
| ACGGC | Cut | Impaired | Blocked |
g g
A C G G C
T G C C G
g g
|
BceAI |
BceAI |
|
| ACGT | Cut | Impaired | Blocked |
m6
A C G T
T G C A
m6
|
HpyCH4IV |
TaiI |
|
| AGCGCT | Cut | Impaired | Blocked |
m6
A G C G C T
T C G C G A
m6
|
AfeI |
Eco47III |
|
| AGCT | Cut | Impaired | Blocked |
m5
A G C T
T C G A
|
AluBI |
AluBI |
AluI |
m5 A G C T T C G A m5 |
AluBI |
AluBI |
AluI |
| AGGCCT | Cut | Impaired | Blocked |
m5
A G G C C T
T C C G G A
m5
|
SseBI |
AatI |
|
m6
A G G C C T
T C C G G A
m6
|
StuI |
Eco147I |
|
| ATGCAT | Cut | Impaired | Blocked |
m5
A T G C A T
T A C G T A
m5
|
NsiI |
EcoT22I |
|
| CAGCTG | Cut | Impaired | Blocked |
m5
C A G C T G
G T C G A C
m5
|
PvuII |
PvuII |
Cfr6I PvuII |
| CAGNNNCTG | Cut | Impaired | Blocked |
m5
C A G N N N C T G
G T C N N N G A C
|
PstNI |
AlwNI |
|
| CATG | Cut | Impaired | Blocked |
m6
C A T G
G T A C
|
FatI |
CviAII NlaIII |
|
m6
C A T G
G T A C
m6
|
FatI |
CviAII NlaIII |
|
m5
C A T G
G T A C
|
CviAII |
NlaIII |
|
m5
C A T G
G T A C
m5
|
CviAII |
CviAII FaeI FatI NlaIII |
|
| CCATGG | Cut | Impaired | Blocked |
m5
C C A T G G
G G T A C C
|
Bsp19I |
NcoI |
|
| CCCGGG | Cut | Impaired | Blocked |
m5
C C C G G G
G G G C C C
m5
|
XmaI |
Cfr9I XmaI |
SmaI TspMI |
m5
C C C G G G
G G G C C C
m5
|
SmaI |
SmaI XmaI Cfr9I |
TspMI |
| CCGCTC | Cut | Impaired | Blocked |
m5
C C G C T C
G G C G A G
|
AccBSI BsrBI |
MbiI |
|
| CCGG | Cut | Impaired | Blocked |
h
C C G G
G G C C
|
MspI |
MspI |
HpaII |
h
C C G G
G G C C
h
|
MspI |
MspI |
HpaII |
h
C C G G
G G C C
m5
|
MspI |
MspI |
HpaII |
m5
C C G G
G G C C
|
MspI |
HpaII |
|
m5
C C G G
G G C C
m5
|
BsiSI CceI MspI |
CboI MspI |
HapII HpaII |
m5
C C G G
G G C C
|
HpaII |
MspI |
HpaII MspI |
| CCNNNNNNNGG | Cut | Impaired | Blocked |
m5
C C N N N N N N N G G
G G N N N N N N N C C
|
BslI |
BslI BseLI |
Bsc4I |
| CCTNAGG | Cut | Impaired | Blocked |
m6
C C T N A G G
G G A N T C C
|
Bsu36I |
MstII |
|
| CCWGG | Cut | Impaired | Blocked |
m5
C C W G G
G G W C C
m5
|
AjnI AorI ApyI BciT130I BshGI BsiLI Bsp56I Bst2UI BstNI BstOI CthII MpsI MvaI Psp39I Scg2I Sth302I TaqXI ZanI |
CbrI EcoRII PspGI |
|
m4
C C W G G
G G W C C
|
EcoRII |
AjnI MvaI |
|
m5
C C W G G
G G W C C
|
MvaI PspGI |
EcoRII |
AjnI Psp6I |
m5
C C W G G
G G W C C
m5
|
BstNI |
AjnI ApyI PspGI |
|
m5m5
C C W G G
G G W C C
|
BstNI |
ApyI EcoRII |
|
m5m5
C C W G G
G G W C C
m5m5
|
BstNI |
BstNI |
EcoRII MvaI PspGI |
| CGRYCG | Cut | Impaired | Blocked |
m6
C G R Y C G
G C Y R G C
m6
|
BsiEI |
Bsh1285I |
|
| CTCTTC | Cut | Impaired | Blocked |
m5
C T C T T C
G A G A A G
|
Eam1104I |
EarI |
Bst6I |
| CTGGAG | Cut | Impaired | Blocked |
m5
C T G G A G
G A C C T C
m5
|
BpmI |
GsuI |
|
| CTNAG | Cut | Impaired | Blocked |
m6
C T N A G
G A N T C
|
BstDEI |
DdeI |
|
| CYCGRG | Cut | Impaired | Blocked |
m5
C Y C G R G
G R G C Y C
m5
|
BmeT110I BsoBI |
Eco88I |
AvaI |
m5
C Y C G R G
G R G C Y C
m5
|
BmeT110I |
AquI AvaI |
|
| GAAGA | Cut | Impaired | Blocked |
G A A G A C T T C T m5 m5 |
MboII |
MboII |
MboII |
| GAANNNNTTC | Cut | Impaired | Blocked |
h G A A N N N N T T C C T T N N N N A A G h |
XmnI |
XmnI |
|
m5 G A A N N N N T T C C T T N N N N A A G m5 |
XmnI |
PdmI XmnI |
|
| GAATTC | Cut | Impaired | Blocked |
m6
G A A T T C
C T T A A G
|
EcoRI |
RsrI |
|
| GACGTC | Cut | Impaired | Blocked |
m5
G A C G T C
C T G C A G
|
ZraI |
AatII |
|
m6
G A C G T C
C T G C A G
m6
|
AatII |
ZraI |
|
| GAGCTC | Cut | Impaired | Blocked |
m5
G A G C T C
C T C G A G
|
Eco53kI SacI SstI |
Ecl136II |
Ecl136II |
m5 G A G C T C C T C G A G m5 |
SacI |
Ecl136II Eco53kI |
|
| GAGTC | Cut | Impaired | Blocked |
m5 G A G T C C T C A G m5 |
MlyI |
PleI |
|
| GANTC | Cut | Impaired | Blocked |
m5
G A N T C
C T N A G
|
HinfI |
HinfI HinfI |
HinfI |
| GATC | Cut | Impaired | Blocked |
m5
G A T C
C T A G
|
BstKTI DpnII MboI NdeII |
MboI Sau3AI |
BfuCI Bsp143I Sau3AI |
m5 G A T C C T A G m5 |
BstKTI DpnII MboI NdeII |
MboI |
LlaKR2I Sau3AI Sth368I |
m6
G A T C
C T A G
|
BfuCI Bsp143I BstKTI Sau3AI |
Sau3AI MboI |
CacI DpnII MboI NdeII |
m6
G A T C
C T A G
m6
|
AspMDI Bce243I Bfi57I BfuCI BscXII Bsp122I Bsp143I Bsp2095I Bsp49I Bsp51I Bsp52I Bsp54I Bsp57I Bsp58I Bsp59I Bsp60I Bsp61I Bsp64I Bsp65I Bsp66I Bsp67I Bsp72I Bsp91I BspAI BspFI BspJ64I BsrPII BtcI CcyI CpfI Csp5I FnuEI Kzo9I Mmu5I MmuP2I MspBI PbrTI Pei9403I PfaI Sau3AI SauMI Sth368I |
BstENII |
BscFI Bsp105I BspKT6I BstEIII BstKTI CpfAI CtyI CviAI DpnII Gst1588II HpyAIII LlaAI MboI Mel2TI Mel3JI Mel4OI Mel5JI Mel5OI Mel5TI Mel7JI MmeII NciAI NdeII RalF40I TrsKTI TrsSI TrsTI |
| GAWTC | Cut | Impaired | Blocked |
m5
G A W T C
C T W A G
|
TfiI |
PfeI |
|
| GCGC | Cut | Impaired | Blocked |
m5
G C G C
C G C G
|
BstHHI HhaI HinP1I HspAI |
AspLEI |
|
| GCNGC | Cut | Impaired | Blocked |
m5
G C N G C
C G N C G
|
BsoFI |
Fnu4HI SatI |
|
m5 G C N G C C G N C G m5 |
ItaI |
BsoFI Fnu4HI Fsp4HI |
|
m5
G C N G C
C G N C G
m5
|
BsoFI |
BsoFI |
BsoFI Fnu4HI Fsp4HI ItaI SatI |
| GCNNNNNNNGC | Cut | Impaired | Blocked |
m5 G C N N N N N N N G C C G N N N N N N N C G m5 |
MwoI |
HpyF10VI |
|
| GCTAGC | Cut | Impaired | Blocked |
m5
G C T A G C
C G A T C G
|
AsuNHI BmtI |
NheI |
NheI |
m5 G C T A G C C G A T C G m5 |
BmtI |
NheI |
|
| GCTCTTC | Cut | Impaired | Blocked |
G C T C T T C
C G A G A A G
m6
|
BspQI |
SapI |
|
| GDGCHC | Cut | Impaired | Blocked |
m6
G D G C H C
C H C G D G
m6
|
Bsp1286I |
MhlI |
|
| GGATCC | Cut | Impaired | Blocked |
m6
G G A T C C
C C T A G G
m6
|
BamFI BamHI BamKI BnaI BstI |
SolI |
|
| GGATG | Cut | Impaired | Blocked |
G G A T G C C T A C g g g |
BtsCI FokI |
BtsCI FokI |
|
G G A T G C C T A C h h h |
BtsCI FokI |
BtsCI FokI |
|
G G A T G C C T A C m4 |
FokI |
FokI |
|
| GGCC | Cut | Impaired | Blocked |
m4
G G C C
C C G G
|
BsuRI NgoPII |
BsuRI HaeIII |
|
m5
G G C C
C C G G
|
BshFI HaeIII PhoI |
NgoPII |
|
m5 G G C C C C G G m5 |
EsaBC4I |
EsaBC4I SuaI |
BshFI BspRI BsuRI CbeI HaeIII MthTI NgoPII NgoSII Pru2I |
| GGCGCC | Cut | Impaired | Blocked |
m5 G G C G C C C C G C G G m5 |
BbeI EheI KasI NarI PluTI |
SfoI |
|
m5
G G C G C C
C C G C G G
|
KasI |
SfoI NarI |
EheI |
m5 G G C G C C C C G C G G m5 |
BbeI KasI |
NarI |
NarI SfoI |
| GGGAC | Cut | Impaired | Blocked |
G G G A C C C C T G m5 |
FaqI |
BsmFI |
|
| GGNNCC | Cut | Impaired | Blocked |
m5
G G N N C C
C C N N G G
|
BspLI |
PspN4I |
NlaIV |
| GGTACC | Cut | Impaired | Blocked |
m5
G G T A C C
C C A T G G
|
KpnI |
Acc65I |
Asp718I |
m5 G G T A C C C C A T G G m5 |
KpnI |
Acc65I |
|
m5m5 G G T A C C C C A T G G m5m5 |
KpnI |
Acc65I |
|
| GGTCTC | Cut | Impaired | Blocked |
G G T C T C C C A G A G m5 |
BsaI |
Bso31I Eco31I |
BsaI |
| GGWCC | Cut | Impaired | Blocked |
m4
G G W C C
C C W G G
|
AflI AvaII |
Bme18I |
|
m5
G G W C C
C C W G G
|
AflI Mae7806ORF260P MspNI |
AvaII Bme216I Eco47I VpaK11BI |
|
| GKGCMC | Cut | Impaired | Blocked |
m6
G K G C M C
C M C G K G
|
BaeGI |
BseSI |
Bme1580I |
| GRCGYC | Cut | Impaired | Blocked |
m5
G R C G Y C
C Y G C R G
|
BsaHI |
Hin1I |
AhaII |
| GRGCYC | Cut | Impaired | Blocked |
m6
G R G C Y C
C Y C G R G
m6
|
BanII |
FriOI |
|
| GTAC | Cut | Impaired | Blocked |
h G T A C C A T G h |
CviQI |
RsaI |
CviQI RsaI |
m5 G T A C C A T G m5 |
Csp6I CviQI |
CviQI RsaI |
AfaI RsaI |
m6 G T A C C A T G m6 |
Csp6I |
CviQI CviRII RsaI |
|
| GTCTC | Cut | Impaired | Blocked |
G T C T C C A G A G m5 |
BcoDI BsmAI |
Alw26I |
|
m5
G T C T C
C A G A G
|
Alw26I BstMAI |
BcoDI BsmAI |
BsmAI |
| GTGCAC | Cut | Impaired | Blocked |
m6 G T G C A C C A C G T G m6 |
Alw44I |
ApaLI |
|
m5
G T G C A C
C A C G T G
m5
|
ApaLI |
Alw44I |
|
| GTTAAC | Cut | Impaired | Blocked |
m6
G T T A A C
C A A T T G
|
HpaI |
KspAI |
|
| GTYRAC | Cut | Impaired | Blocked |
m5
G T Y R A C
C A R Y T G
|
HincII |
HincII |
HindII |
| RCCGGY | Cut | Impaired | Blocked |
m5
R C C G G Y
Y G G C C R
m5
|
BssAI |
Bse634I BsrFI Cfr10I |
|
m5
R C C G G Y
Y G G C C R
m5
|
BssAI |
Cfr10I |
|
| RGATCY | Cut | Impaired | Blocked |
m6
R G A T C Y
Y C T A G R
m6
|
BstYI MspNII PsuI XhoII |
BloHI MflI |
|
| RGCGCY | Cut | Impaired | Blocked |
m5 R G C G C Y Y C G C G R m5 |
Bsp143II |
HaeII |
|
| TCATGA | Cut | Impaired | Blocked |
m6
T C A T G A
A G T A C T
|
BspHI |
BspHI PagI |
BspHI RspXI |
| TCCGGA | Cut | Impaired | Blocked |
m6
T C C G G A
A G G C C T
|
BspMII Kpn2I MroI |
AccIII BseAI BsiMI BspEI |
|
m5
T C C G G A
A G G C C T
m5
|
AccIII |
BseAI BspEI |
BspMII Kpn2I MroI |
m5
T C C G G A
A G G C C T
m5
|
AccIII |
BseAI |
BspEI BspMII Kpn2I MroI |
| TCGA | Cut | Impaired | Blocked |
m6 T C G A A G C T m6 |
EsaBC3I |
CviSIII TaqI TflI TthHB8I |
|
| TCGCGA | Cut | Impaired | Blocked |
m6
T C G C G A
A G C G C T
|
AmaSI SalDI Sbo13I |
NruI SpoI |
|
| TCNGA | Cut | Impaired | Blocked |
g
T C N G A
A G N C T
g
|
Hpy188I |
Hpy188I |
|
| TGCA | Cut | Impaired | Blocked |
m5 T G C A A C G T m5 |
CviRI |
HpyCH4V |
|
| TTCGAA | Cut | Impaired | Blocked |
m6 T T C G A A A A G C T T m6 |
CbiI |
Csp68KII NspV |
Bsp119I BstBI Csp45I SfuI SspRFI |
m5
T T C G A A
A A G C T T
m5
|
AsuII SfuI |
Bsp119I BspT104I BstBI Csp68KII NspV |
|