Switch to: References

Citations of:

A strategy for improving and integrating biomedical ontologies

In Ron Rudnicki (ed.), Proceedings of the Annual Symposium of the American Medical Informatics Association. AMIA. pp. 639-643 (2007)

Add citations

You must login to add citations.
  1. HL7 RIM: An incoherent standard.Barry Smith & Werner Ceusters - 2006 - Studies in Health Technology and Informatics 124 (Proceedings of MIE 2006):133–138.
    The Health Level 7 Reference Information Model (HL7 RIM) is lauded by its authors as ‘the foundation of healthcare interoperability’. Yet even after some 10 years of development work, the RIM is still subject to a variety of logical and ontological flaws which have placed severe obstacles in the way of those who are called upon to develop implementations. We offer evidence that these obstacles are insurmountable and that the time has come to abandon an unworkable paradigm.
    Download  
     
    Export citation  
     
    Bookmark   12 citations  
  • On carcinomas and other pathological entities.Barry Smith, Anand Kumar, Werner Ceusters & Cornelius Rosse - 2005 - Comparative and Functional Genomics 6 (7/8):379–387.
    Tumors, abscesses, cysts, scars, fractures are familiar types of what we shall call pathological continuant entities. The instances of such types exist always in or on anatomical structures, which thereby become transformed into pathological anatomical structures of corresponding types: a fractured tibia, a blistered thumb, a carcinomatous colon. In previous work on biomedical ontologies we showed how the provision of formal definitions for relations such as is_a, part_of and transformation_of can facilitate the integration of such ontologies in ways which have (...)
    Download  
     
    Export citation  
     
    Bookmark   4 citations  
  • An ontology-based methodology for the migration of biomedical terminologies to electronic health records.Barry Smith & Werner Ceusters - 2005 - In Smith Barry & Ceusters Werner (eds.), Proceedings of AMIA Symposium 2005, Washington DC,. AMIA. pp. 704-708.
    Biomedical terminologies are focused on what is general, Electronic Health Records (EHRs) on what is particular, and it is commonly assumed that the step from the one to the other is unproblematic. We argue that this is not so, and that, if the EHR of the future is to fulfill its promise, then the foundations of both EHR architectures and biomedical terminologies need to be reconceived. We accordingly describe a new framework for the treatment of both generals and particulars in (...)
    Download  
     
    Export citation  
     
    Bookmark   1 citation  
  • Establishing and Harmonizing Ontologies in an Interdisciplinary Health Care and Clinical Research Environment.Barry Smith & Mathias Brochhausen - 2008 - Studies in Health, Technology and Informatics 134:219-234.
    Ontologies are being ever more commonly used in biomedical informatics and we provide a survey of some of these uses, and of the relations between ontologies and other terminology resources. In order for ontologies to become truly useful, two objectives must be met. First, ways must be found for the transparent evaluation of ontologies. Second, existing ontologies need to be harmonised. We argue that one key foundation for both ontology evaluation and harmonisation is the adoption of a realist paradigm in (...)
    Download  
     
    Export citation  
     
    Bookmark   2 citations  
  • Biomedical Ontologies.Barry Smith - 2022 - In Peter L. Elkin (ed.), Terminology, Ontology and Their Implementations: Teaching Guide and Notes. Springer. pp. 125-169.
    We begin at the beginning, with an outline of Aristotle’s views on ontology and with a discussion of the influence of these views on Linnaeus. We move from there to consider the data standardization initiatives launched in the 19th century, and then turn to investigate how the idea of computational ontologies developed in the AI and knowledge representation communities in the closing decades of the 20th century. We show how aspects of this idea, particularly those relating to the use of (...)
    Download  
     
    Export citation  
     
    Bookmark   2 citations  
  • An Ontological Approach to Representing the Product Life Cycle.J. Neil Otte, Dimitris Kiritsi, Munira Mohd Ali, Ruoyu Yang, Binbin Zhang, Ron Rudnicki, Rahul Rai & Barry Smith - 2019 - Applied ontology 14 (2):1-19.
    The ability to access and share data is key to optimizing and streamlining any industrial production process. Unfortunately, the manufacturing industry is stymied by a lack of interoperability among the systems by which data are produced and managed, and this is true both within and across organizations. In this paper, we describe our work to address this problem through the creation of a suite of modular ontologies representing the product life cycle and its successive phases, from design to end of (...)
    Download  
     
    Export citation  
     
    Bookmark   3 citations  
  • (1 other version)Logical properties of foundational mereogeometrical relations in bio-ontologies.Thomas Bittner - 2006 - Applied ontology 4 (2):109-138.
    Download  
     
    Export citation  
     
    Bookmark   3 citations