Philosophers of science commonly connect ontology and science, stating that these disciplines maintain a two-way relationship: on the one hand, we can extract ontology from scientific theories; on the other hand, ontology provides the realistic content of our scientific theories. In this article, we will critically examine the process of naturalizing ontology, i.e., confining the work of ontologists merely to the task of pointing out which entities certain theories commit themselves to. We will use non-relativistic quantum mechanics as a case (...) study. We begin by distinguishing two roles for ontology: the first would be characterized by cataloging existing entities according to quantum mechanics; the second would be characterized by establishing more general ontological categories in which existing entities must be classified. We argue that only the first step is available for a naturalistic approach; the second step not being open for determination or anchoring in science. Finally, we also argue that metaphysics is still a step beyond ontology, not contained in either of the two tasks of ontology, being thus even farther from science. (shrink)