WO2006127588A2 - Modulators of atp-binding cassette transporters - Google Patents
Modulators of atp-binding cassette transporters Download PDFInfo
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- WO2006127588A2 WO2006127588A2 PCT/US2006/019712 US2006019712W WO2006127588A2 WO 2006127588 A2 WO2006127588 A2 WO 2006127588A2 US 2006019712 W US2006019712 W US 2006019712W WO 2006127588 A2 WO2006127588 A2 WO 2006127588A2
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- carboxamide
- pyrimidine
- phenyl
- optionally substituted
- piperidyl
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- 0 *N(*)C(c1nc(N2CCCCC2)nc(-c2ccccc2)c1)=O Chemical compound *N(*)C(c1nc(N2CCCCC2)nc(-c2ccccc2)c1)=O 0.000 description 1
- SVRKMQJCRACCBP-UHFFFAOYSA-N CN(CCc1ccccc1)c1nc(C(N)=O)cc(-c2ccccc2)n1 Chemical compound CN(CCc1ccccc1)c1nc(C(N)=O)cc(-c2ccccc2)n1 SVRKMQJCRACCBP-UHFFFAOYSA-N 0.000 description 1
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Definitions
- the present invention relates to modulators of ATP-Binding
- ABS Abbreviations: Cystic Fibrosis Transmembrane Conductance Regulator
- the present invention also relates to methods of treating ABC transporter mediated diseases using such modulators.
- ABC transporters are a family of membrane transporter proteins that regulate the transport of a wide variety of pharmacological agents, potentially toxic drugs, and xenobiotics, as well as anions.
- ABC transporters are homologous membrane proteins that bind and use cellular adenosine triphosphate (ATP) for their specific activities. Some of these transporters were discovered as multi-drug resistance proteins (like the MDRl-P glycoprotein, or the multi-drug resistance protein, MRPl), defending malignant cancer cells against chemotherapeutic agents. To date, 48 ABC Transporters have been identified and grouped into 7 families based on their sequence identity and function.
- ABC transporters regulate a variety of important physiological roles within the body and provide defense against harmful environmental compounds. Because of this, they represent important potential drug targets for the treatment of diseases associated with defects in the transporter, prevention of drug transport out of the target cell, and intervention in other diseases in which modulation of ABC transporter activity may be beneficial.
- CFTR cAMP/ATP-mediated anion channel
- CFTR is expressed in a variety of cells types, including absorptive and secretory epithelia cells, where it regulates anion flux across the membrane, as well as the activity of other ion channels and proteins. In epithelia cells, normal functioning of CFTR is critical for the maintenance of electrolyte transport throughout the body, including respiratory and digestive tissue.
- CFTR is composed of approximately 1480 amino acids that encode a protein made up of a tandem repeat of transmembrane domains, each containing six transmembrane helices and a nucleotide binding domain. The two transmembrane domains are linked by a large, polar, regulatory (R)-domain with multiple phosphorylation sites that regulate channel activity and cellular trafficking.
- Cystic Fibrosis affects approximately one in every 2,500 infants in the United States. Within the general United States population, up to 10 million people carry a single copy of the defective gene without apparent ill effects. In contrast, individuals with two copies of the CF associated gene suffer from the debilitating and fatal effects of CF, including chronic lung disease.
- the most prevalent mutation is a deletion of phenylalanine at position 508 of the CFTR amino acid sequence, and is commonly referred to as ⁇ F508-CFTR. This mutation occurs in approximately 70% of the cases of cystic fibrosis and is associated with a severe disease.
- CFTR transports a variety of molecules in addition to anions
- this role represents one element in an important mechanism of transporting ions and water across the epithelium.
- the other elements include the epithelial Na + channel, ENaC, Na + /2C17K + co-transporter, Na + -K + - ATPase pump and the basolateral membrane K + channels, that are responsible for the uptake of chloride into the cell.
- CFTR activity may be beneficial for other diseases not directly caused by mutations in CFTR, such as secretory diseases and other protein folding diseases mediated by CFTR. These include, but are not limited to, chronic obstructive pulmonary disease (COPD), dry eye disease, and Sjogren's Syndrome.
- COPD chronic obstructive pulmonary disease
- COPD dry eye disease
- Sjogren's Syndrome Sjogren's Syndrome
- COPD is characterized by airflow limitation that is progressive and not fully reversible.
- the airflow limitation is due to mucus hypersecretion, emphysema, and bronchiolitis.
- Activators of mutant or wild-type CFTR offer a potential treatment of mucus hypersecretion and impaired mucociliary clearance that is common in COPD.
- increasing anion secretion across CFTR may facilitate fluid transport into the airway surface liquid to hydrate the mucus and optimized periciliary fluid viscosity. This would lead to enhanced mucociliary clearance and a reduction in the symptoms associated with COPD.
- Dry eye disease is characterized by a decrease in tear aqueous production and abnormal tear film lipid, protein and mucin profiles.
- Sjogrens's syndrome is an autoimmune disease in which the immune system attacks moisture-producing glands throughout the body, including the eye, mouth, skin, respiratory tissue, liver, vagina, and gut. Symptoms, include, dry eye, mouth, and vagina, as well as lung disease.
- the disease is also associated with rheumatoid arthritis, systemic lupus, systemic sclerosis, and polymypositis/dermatomyositis. Defective protein trafficking is believed to cause the disease, for which treatment options are limited. Modulators of CFTR activity may hydrate the various organs afflicted by the disease and help to elevate the associated symptoms.
- ⁇ F508-CFTR prevents the nascent protein from folding correctly, resulting in the inability of this mutant protein to exit the ER, and traffic to the plasma membrane.
- insufficient amounts of the mature protein are present at the plasma membrane and chloride transport within epithelial tissues is significantly reduced.
- this cellular phenomenon of defective ER processing of ABC transporters by the ER machinery has been shown to be the underlying basis not only for CF disease, but for a wide range of other isolated and inherited diseases.
- the diseases associated with the first class of ER malfunction are Cystic fibrosis (due to misfolded ⁇ F508-CFTR as discussed above), Hereditary emphysema (due to al -antitrypsin; non Piz variants), Hereditary hemochromatosis, Coagulation-Fibrinolysis deficiencies, such as Protein C deficiency, Type 1 hereditary angioedema, Lipid processing deficiencies, such as Familial hypercholesterolemia, Type 1 chylomicronemia, Abetalipoproteinemia, Lysosomal storage diseases, such as I-cell disease/Pseudo-Hurler, Mucopolysaccharidoses (due to Lysosomal processing enzymes), Sandhof/Tay-Sachs (due to ⁇ -Hexosaminidase), Crigler-Najjar type II (due to UDP- glucuronyl-sialyc-transferase), Poly
- Glycanosis CDG type 1 Hereditary emphysema (due to ⁇ l- Antitrypsin (PiZ variant), Congenital hyperthyroidism, Osteogenesis imperfecta (due to Type I, ⁇ , TV procollagen), Hereditary hypofibrinogenemia (due to Fibrinogen), ACT deficiency (due to ⁇ l-Antichymotrypsin), Diabetes insipidus (DI), Neurophyseal DI (due to Vasopvessin hormone/ V2-receptor), Neprogenic DI (due to Aquaporin II), Charcot- Marie Tooth syndrome (due to Peripheral myelin protein 22), Perlizaeus-Merzbacher disease, neurodegenerative diseases such as Alzheimer's disease (due to ⁇ APP and presenilins), Parkinson's disease, Amyotrophic lateral sclerosis, Progressive supranuclear plasy
- CFTR modulators may be beneficial for the treatment of secretory diarrheas, in which epithelial water transport is dramatically increased as a result of secretagogue activated chloride transport.
- the mechanism involves elevation of cAMP and stimulation of CFTR.
- Acute and chronic diarrheas represent a major medical problem in many areas of the world. Diarrhea is both a significant factor in malnutrition and the leading cause of death (5,000,000 deaths/year) in children less than five years old.
- Diarrhea in barn animals and pets such as cows, pigs and horses, sheep, goats, cats and dogs, also known as scours, is a major cause of death in these animals. Diarrhea can result from any major transition, such as weaning or physical movement, as well as in response to a variety of bacterial or viral infections and generally occurs within the first few hours of the animal's life.
- ETEC enterotoxogenic E- coli
- Common viral causes of diarrhea include rotavirus and coronavirus.
- Other infectious agents include Cryptosporidium, giardia Iamblia, and salmonella, among others.
- Symptoms of rotaviral infection include excretion of watery feces, dehydration and weakness. Coronavirus causes a more severe illness in the newborn animals, and has a higher mortality rate than rotaviral infection. Often, however, a young animal may be infected with more than one virus or with a combination of viral and bacterial microorganisms at one time. This dramatically increases the severity of the disease.
- ABC-transporter as used herein means an ABC- transporter protein or a fragment thereof comprising at least one binding domain, wherein said protein or fragment thereof is present in vivo or in vitro.
- binding domain as used herein means a domain on the ABC-transporter that can bind to a modulator. See, e.g., Hwang, T. C. et al., J. Gen. Physiol. (1998): 111(3), 477-90.
- CFTR cystic fibrosis transmembrane conductance regulator or a mutation thereof capable of regulator activity, including, but not limited to, ⁇ F508 CFTR and G551D CFTR (see, e.g., https://www.genet.sickkids.on.ca/cftr/, for CFTR mutations).
- modulating means increasing or decreasing, e.g. activity, by a measurable amount.
- Compounds that modulate ABC Transporter activity, such as CFTR activity, by increasing the activity of the ABC Transporter, e.g., a CFTR anion channel are called agonists.
- Compounds that modulate ABC Transporter activity, such as CFTR activity, by decreasing the activity of the ABC Transporter, e.g., CFTR anion channel are called antagonists.
- An agonist interacts with an ABC Transporter, such as CFTR anion channel, to increase the ability of the receptor to transduce an intracellular signal in response to endogenous ligand binding.
- An antagonist interacts with an ABC Transporter, such as CFTR, and competes with the endogenous ligand(s) or substrate(s) for binding site(s) on the receptor to decrease the ability of the receptor to transduce an intracellular signal in response to endogenous ligand binding.
- ABC Transporter such as CFTR
- the phrase "treating or reducing the severity of an ABC Transporter mediated disease” refers both to treatments for diseases that are directly caused by ABC Transporter and/or CFTR activities and alleviation of symptoms of diseases not directly caused by ABC Transporter and/or CFTR anion channel activities.
- diseases whose symptoms may be affected by ABC Transporter and/or CFTR activity include, but are not limited to, Cystic fibrosis, Hereditary emphysema, Hereditary hemochromatosis, Coagulation-Fibrinolysis deficiencies, such as Protein C deficiency, Type 1 hereditary angioedema, Lipid processing deficiencies, such as Familial hypercholesterolemia, Type 1 chylomicronemia, Abetalipoproteinemia, Lysosomal storage diseases, such as I-cell disease/Pseudo-Hurler, Mucopolysaccharidoses, Sandhof/Tay-Sachs, Crigler-Najjar type ⁇ , Polyendocrinopathy/Hyperinsulemia, Diabetes mellitus, Laron dwarfism, Myleoperoxidase deficiency, Primary hypoparathyroidism, Melanoma, Glycanosis CDG type 1, Hereditary emphysema,
- aliphatic encompasses the terms alkyl, alkenyl, alkynyl, each of which being optionally substituted as set forth below.
- an "alkyl” group refers to a saturated aliphatic hydrocarbon group containing 1-8 (e.g., 1-6 or 1-4) carbon atoms.
- An alkyl group can be straight or branched. Examples of alkyl groups include, but are not limited to, methyl, ethyl, propyl, isopropyl, butyl, isobutyl, sec-butyl, tert-butyl, n-pentyl, n-heptyl, or 2- ethylhexyl.
- An alkyl group can be substituted (i.e., optionally substituted) with one or more substituents such as halo, cycloaliphatic [e.g., cycloalkyl or cycloalkenyl], heterocycloaliphatic [e.g., heterocycloalkyl or heterocycloalkenyl], aryl, heteroaryl, alkoxy, aroyl, heteroaroyl, acyl [e.g., (aliphatic)carbonyl, (cycloaliphatic)carbonyl, or (heterocycloaliphatic)carbonyl], nitro, cyano, amido [e.g., (cycloalkylalkyl)carbonylamino, arylcarbonylamino, aralkylcarbonylamino, (heterocycloalkyl)carbonylamino, (heterocycloalkylalkyl)carbonylamino, heteroarylcarbonylamino, heteroaralkylcarbon
- substituted alkyls include carboxyalkyl (such as HOOC- alkyl, alkoxycarbonylalkyl, and alkylcarbonyloxyalkyl), cyanoalkyl, hydroxyalkyl, alkoxyalkyl, acylalkyl, aralkyl, (alkoxyaryl)alkyl, (sulfonylamino)alkyl (such as (alkyl- SO 2 -amino)alkyl), aminoalkyl, amidoalkyl, (cycloaliphatic)alkyl, or haloalkyl.
- carboxyalkyl such as HOOC- alkyl, alkoxycarbonylalkyl, and alkylcarbonyloxyalkyl
- cyanoalkyl hydroxyalkyl, alkoxyalkyl, acylalkyl, aralkyl, (alkoxyaryl)alkyl, (sulfonylamino)alkyl (such as (alky
- an "alkenyl” group refers to an aliphatic carbon group that contains 2-8 (e.g., 2-6 or 2-4) carbon atoms and at least one double bond. Like an alkyl group, an alkenyl group can be straight or branched. Examples of an alkenyl group include, but are not limited to, allyl, isoprenyl, 2-butenyl, and 2-hexenyl.
- An alkenyl group can be optionally substituted with one or more substituents such as halo, cycloaliphatic [e.g., cycloalkyl or cycloalkenyl], heterocycloaliphatic [e.g., heterocycloalkyl or heterocycloalkenyl], aryl, heteroaryl, alkoxy, aroyl, heteroaroyl, acyl [e.g., (aliphatic)carbonyl, (cycloaliphatic)carbonyl, or (heterocycloaliphatic)carbonyl], nitro, cyano, amido [e.g., (cycloalkylalkyl)carbonylamino, arylcarbonylamino, aralkylcarbonylamino, (heterocycloalkyl)carbonylamino, (heterocycloalkylalkyl)carbonylamino, heteroarylcarbonylamino, heteroaralkylcarbonylamino alkylamin
- substituted alkenyls include cyanoalkenyl, alkoxyalkenyl, acylalkenyl, hydroxyalkenyl, aralkenyl, (alkoxyaryl)alkenyl, (sulfonylamino)alkenyl (such as (alkyl- SO 2 -amino)alkenyl), aminoalkenyl, amidoalkenyl, (cycloaliphatic)alkenyl, or haloalkenyl.
- an "alkynyl” group refers to an aliphatic carbon group that contains 2-8 (e.g., 2-6 or 2-4) carbon atoms and has at least one triple bond.
- An alkynyl group can be straight or branched. Examples of an alkynyl group include, but are not limited to, propargyl and butynyl.
- An alkynyl group can be optionally substituted with one or more substituents such as aroyl, heteroaroyl, alkoxy, cycloalkyloxy, heterocycloalkyloxy, aryloxy, heteroaryloxy, aralkyloxy, nitro, carboxy, cyano, halo, hydroxy, sulfo, mercapto, sulfanyl [e.g., aliphaticsulfanyl or cycloaliphaticsulfanyl], sulfinyl [e.g., aliphaticsulfinyl or cycloaliphaticsulfinyl], sulfonyl [e.g., aliphatic-SO 2 -, aliphaticamino-S ⁇ 2-, or cycloaliphatic-SC>2-], amido [e.g., aminocarbonyl, alkylaminocarbonyl, alkylcarbonylamino, cycloalkylaminocarbonyl, hetero
- an “amido” encompasses both “aminocarbonyl” and
- carbonylamino when used alone or in connection with another group refers to an amido group such as -N(R X )-C(O)-R Y or -C(O)-N(R X ) 2 , when used terminally, and -C(O)-N(R X )- or -N(R X )-C(O)- when used internally, wherein R x and R ⁇ are defined below.
- amido groups include alkylamido (such as alkylcarbonylamino or alkylaminocarbonyl), (heterocycloaliphatic)amido, (heteroaralkyl)amido, (heteroaryl)amido, (heterocycloalkyl)alkylamido, arylamido, aralkylamido, (cycloalkyl)alkylamido, or cycloalkylamido.
- alkylamido such as alkylcarbonylamino or alkylaminocarbonyl
- heterocycloaliphatic such as alkylcarbonylamino or alkylaminocarbonyl
- heteroaryl heteroaryl
- amino refers to -NR X R Y wherein each of
- R x and R ⁇ is independently hydrogen, alkyl, cycloaliphatic, (cycloaliphatic)aliphatic, aryl, araliphatic, heterocycloaliphatic, (heterocycloaliphatic)aliphatic, heteroaryl, carboxy, sulfanyl, sulfinyl, sulfonyl, (aliphatic)carbonyl, (cycloaliphatic)carbonyl, ((cycloaliphatic)aliphatic)carbonyl, arylcarbonyl, (araliphatic)carbonyl, (heterocycloaliphatic)carbonyl, ((heterocycloaliphatic)aliphatic)carbonyl, (heteroaryl)carbonyl, or (heteroaraliphatic)carbonyl, each of which being defined herein and being optionally substituted.
- amino groups examples include alkylamino, dialkylamino, or arylamino.
- amino When the term “amino” is not the terminal group (e.g., alkylcarbonylamino), it is represented by -NR -. R has the same meaning as defined above.
- an "aryl” group used alone or as part of a larger moiety as in “aralkyl”, “aralkoxy”, or “aryloxyalkyl” refers to monocyclic (e.g., phenyl); bicyclic (e.g., indenyl, naphthalenyl, tetrahydronaphthyl, tetrahydroindenyl); and tricyclic (e.g., fluorenyl tetrahydrofluorenyl, or tetrahydroanthracenyl, anthracenyl) ring systems in which the monocyclic ring system is aromatic or at least one of the rings in a bicyclic or tricyclic ring system is aromatic.
- the bicyclic and tricyclic groups include benzofused 2-3 membered carbocyclic rings.
- a benzofused group includes phenyl fused with two or more C 4-8 carbocyclic moieties.
- An aryl is optionally substituted with one or more substituents including aliphatic [e.g., alkyl, alkenyl, or alkynyl]; cycloaliphatic; (cycloaliphatic)aliphatic; heterocycloaliphatic; (heterocycloaliphatic)aliphatic; aryl; heteroaryl; alkoxy; (cycloaliphatic)oxy; (heterocycloaliphatic)oxy; aryloxy; heteroaryloxy; (araliphatic)oxy; (heteroaraliphatic)oxy; aroyl; heteroaroyl; amino; oxo (on a non-aromatic carbocyclic ring of a benzofused bicyclic or tricyclic aryl); nitro; carb
- an aryl can be unsubstituted.
- Non-limiting examples of substituted aryls include haloaryl [e.g., mono-, di ( such as ⁇ m-dihaloaryl), and (trihalo)aryl]; (carboxy)aryl [e.g., (alkoxycarbonyl)aryl, ((aralkyl)carbonyloxy)aryl, and (alkoxycarbonyl)aryl]; (amido)aryl [e.g., (aminocarbonyl)aryl, (((alkylamino)alkyl)aminocarbonyl)aryl, (alkylcarbonyl)aminoaryl, (arylaminocarbonyl)aryl, and
- an "araliphatic” such as an “aralkyl” group refers to an aliphatic group (e.g., a Ci -4 alkyl group) that is substituted with an aryl group.
- "Aliphatic,” “alkyl,” and “aryl” are defined herein.
- An example of an araliphatic such as an aralkyl group is benzyl.
- an "aralkyl” group refers to an alkyl group (e.g., a
- Ci -4 alkyl group that is substituted with an aryl group. Both "alkyl” and “aryl” have been defined above.
- An example of an aralkyl group is benzyl.
- An aralkyl is optionally substituted with one or more substituents such as aliphatic [e.g., alkyl, alkenyl, or alkynyl, including carboxyalkyl, hydroxyalkyl, or haloalkyl such as trifluoromethyl], cycloaliphatic [e.g., cycloalkyl or cycloalkenyl], (cycloalkyl)alkyl, heterocycloalkyl, (heterocycloalkyl)alkyl, aryl, heteroaryl, alkoxy, cycloalkyloxy, heterocycloalkyloxy, aryloxy, heteroaryloxy, aralkyloxy, heteroaralkyloxy, aroyl, heteroaroyl, nitro, carboxy
- a "bicyclic ring system” includes 8-12 (e.g., 9, 10, or 11) membered structures that form two rings, wherein the two rings have at least one atom in common (e.g., 2 atoms in common).
- Bicyclic ring systems include bicycloaliphatics (e.g., bicycloalkyl or bicycloalkenyl), bicycloheteroaliphatics, bicyclic aryls, and bicyclic heteroaryls.
- cycloaliphatic encompasses a
- cycloalkyl group and a “cycloalkenyl” group, each of which being optionally substituted as set forth below.
- a "cycloalkyl” group refers to a saturated carbocyclic mono- or bicyclic (fused or bridged) ring of 3-10 (e.g., 5-10) carbon atoms.
- Examples of cycloalkyl groups include cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, cycloheptyl, adamantyl, norbornyl, cubyl, octahydro-indenyl, decahydro-naphthyl, bicyclo[3.2.1]octyl, bicyclo[2.2.2]octyl, bicyclo[3.3.1]nonyl, bicyclo[3.3.2.]decyl, bicyclo[2.2.2]octyl, adamantyl, azacycloalkyl, or ((aminocarbonyl)cycloalkyl)cycloalkyl.
- a "cycloalkenyl” group refers to a non-aromatic carbocyclic ring of 3-10 (e.g., 4-8) carbon atoms having one or more double bonds.
- Examples of cycloalkenyl groups include cyclopentenyl, 1,4-cyclohexa-di-enyl, cycloheptenyl, cyclooctenyl, hexahydro-indenyl, octahydro-naphthyl, cyclohexenyl, cyclopentenyl, bicyclo[2.2.2]octenyl, or bicyclo[3.3.1]nonenyl.
- a cycloalkyl or cycloalkenyl group can be optionally substituted with one or more substituents such as aliphatic [e.g., alkyl, alkenyl, or alkynyl], cycloaliphatic, (cycloaliphatic) aliphatic, heterocycloaliphatic, (heterocycloaliphatic) aliphatic, aryl, heteroaryl, alkoxy, (cycloaliphatic)oxy, (heterocycloaliphatic)oxy, aryloxy, heteroaryloxy, (araliphatic)oxy, (heteroaraliphatic)oxy, aroyl, heteroaroyl, amino, amido [e.g., (aliphatic)carbonylamino, (cycloaliphatic)carbonylamino, ((cycloaliphatic)aliphatic)carbonylamino, (aryl)carbonylamino, (araliphatic)carbonylamino, (heterocycloaliphatic)carbon
- cyclic moiety includes cycloaliphatic, heterocycloaliphatic, aryl, or heteroaryl, each of which has been defined previously.
- heterocycloaliphatic encompasses a heterocycloalkyl group and a heterocycloalkenyl group, each of which being optionally substituted as set forth below.
- heterocycloalkyl refers to a 3-10 membered mono- or bicylic (fused or bridged) (e.g., 5- to 10-membered mono- or bicyclic) saturated ring structure, in which one or more of the ring atoms is a heteroatom (e.g., N, O, S, or combinations thereof).
- heterocycloalkyl group examples include piperidyl, piperazyl, tetrahydropyranyl, tetrahydrofuryl, 1,4-dioxolanyl, 1,4-dithianyl, 1,3- dioxolanyl, oxazolidyl, isoxazolidyl, morpholinyl, thiomorpholyl, octahydrobenzofuryl, octahydrochromenyl, octahydrothiochromenyl, octahydroindolyl, octahydropyrindinyl, decahydroquinolinyl, octahydrobenzo[/?]thiopheneyl, 2-oxa-bicyclo[2.2.2]octyl, 1-aza- bicyclo[2.2.2]octyl, 3-aza-bicyclo[3.2.1]octyl, anad 2,6-diox
- a monocyclic heterocycloalkyl group can be fused with a phenyl moiety such as tetrahydroisoquinoline.
- a "heterocycloalkenyl” group refers to a mono- or bicylic (e.g., 5- to 10-membered mono- or bicyclic) non-aromatic ring structure having one or more double bonds, and wherein one or more of the ring atoms is a heteroatom (e.g., N, O, or S).
- Monocyclic and bicycloheteroaliphatics are numbered according to standard chemical nomenclature.
- a heterocycloalkyl or heterocycloalkenyl group can be optionally substituted with one or more substituents such as aliphatic [e.g., alkyl, alkenyl, or alkynyl], cycloaliphatic, (cycloaliphatic)aliphatic, heterocycloaliphatic, (heterocycloaliphatic)aliphatic, aryl, heteroaryl, alkoxy, (cycloaliphatic)oxy, (heterocycloaliphatic)oxy, aryloxy, heteroaryloxy, (araliphatic)oxy, (heteroaraliphatic)oxy, aroyl, heteroaroyl, amino, amido [e.g., (aliphatic)carbonylamino, (cycloaliphatic)carbonylamino, ((cycloaliphatic) aliphatic)carbonylamino, (aryl)carbonylamino, (araliphatic)carbonylamino, (heterocycloaliphatic), (he
- a “heteroaryl” group refers to a monocyclic, bicyclic, or tricyclic ring system having 4 to 15 ring atoms wherein one or more of the ring atoms is a heteroatom (e.g., N, O, S, or combinations thereof) and in which the monocyclic ring system is aromatic or at least one of the rings in the bicyclic or tricyclic ring systems is aromatic.
- a heteroaryl group includes a benzofused ring system having 2 to 3 rings.
- a benzofused group includes be ⁇ zo fused with one or two 4 to 8 membered heterocycloaliphatic moieties (e.g., indolizyl, indolyl, isoindolyl, 3H-indolyl, indolinyl, benzo[&]furyl, benzo[Z?]thiophenyl, quinolinyl, or isoquinolinyl).
- heterocycloaliphatic moieties e.g., indolizyl, indolyl, isoindolyl, 3H-indolyl, indolinyl, benzo[&]furyl, benzo[Z?]thiophenyl, quinolinyl, or isoquinolinyl.
- heteroaryl examples include azetidinyl, pyridyl, lH-indazolyl, furyl, pyrrolyl, thienyl, thiazolyl, oxazolyl, imidazolyl, tetrazolyl, benzofuryl, isoquinolinyl, benzthiazolyl, xanthene, thioxanthene, phenothiazine, dihydroindole, benzo[l,3]dioxole, benzo[b]furyl, benzo[b]thiophenyl, indazolyl, benzimidazolyl, benzthiazolyl, puryl, cinnolyl, quinolyl, quinazolyl,cinnolyl, phthalazyl, quinazolyl, quinoxalyl, isoquinolyl, 4H-quinolizyl, benzo-l,2,5-thiadiazolyl
- monocyclic heteroaryls include furyl, thiophenyl, 2H-pyrrolyl, pyrrolyl, oxazolyl, thiazolyl, imidazolyl, pyrazolyl, isoxazolyl, isothiazolyl, 1,3,4-thiadiazolyl, 2H-pyranyl, 4-H-pranyl, pyridyl, pyridazyl, pyrimidyl, pyrazolyl, pyrazyl, or 1,3,5-triazyl.
- Monocyclic heteroaryls are numbered according to standard chemical nomenclature.
- bicyclic heteroaryls include indolizyl, indolyl, isoindolyl, 3H-indolyl, indolinyl, benzo[&]furyl, benzo[fr]thiophenyl, quinolinyl, isoquinolinyl, indolizyl, isoindolyl, indolyl, benzo[fc]furyl, bexo[&]thiophenyl, indazolyl, benzimidazyl, benzthiazolyl, purinyl, 4H-quinolizyl, quinolyl, isoquinolyl, cinnolyl, phthalazyl, quinazolyl, quinoxalyl, 1,8-naphthyridyl, or pteridyl.
- Bicyclic heteroaryls are numbered according to standard chemical nomenclature.
- a heteroaryl is optionally substituted with one or more substituents such as aliphatic [e.g., alkyl,. alkenyl, or alkynyl]; cycloaliphatic; (cycloaliphatic)aliphatic; heterocycloaliphatic; (heterocycloaliphatic)aliphatic; aryl; heteroaryl; alkoxy; (cycloaliphatic)oxy; (heterocycloaliphatic)oxy; aryloxy; heteroaryloxy; (araliphatic)oxy; (heteroarali ⁇ hatic)oxy; aroyl; heteroaroyl; amino; oxo (on a non-aromatic carbocyclic or heterocyclic ring of a bicyclic or tricyclic heteroaryl); carboxy; amido; acyl [ e.g., aliphaticcarbonyl; (cycloaliphatic)carbonyl; ((cycloaliphatic)aliphatic)carbonyl; (aralip
- heterocycloaliphatic aliphatic
- carbonyl or (heteroaraliphatic)carbonyl]
- sulfonyl e.g., aliphaticsulfonyl or aminosulfonyl
- sulfinyl e.g., aliphaticsulfinyl
- sulfanyl e.g., aliphaticsulfanyl
- a heteroaryl can be unsubstituted.
- Non-limiting examples of substituted heteroaryls include
- halo heteroaryl [e.g., mono- and di-(halo)heteroaryl];
- carboxy)heteroaryl e.g., (alkoxycarbonyl)heteroaryl]; cyanoheteroaryl; aminoheteroaryl [e.g., ((alkylsulfonyl)amino)heteroaryl and((dialkyl)amino)heteroaryl]; (amido)heteroaryl [e.g., aminocarbonylheteroaryl, ((alkylcarbonyl)amino)heteroaryl,
- heteroaralkyl refers to an aliphatic group (e.g., a C 1-4 alkyl group) that is substituted with a heteroaryl group.
- aliphatic group e.g., a C 1-4 alkyl group
- heteroaryl e.g., a C 1-4 alkyl group
- heteroarylkyl refers to an alkyl group (e.g., a C 1-4 alkyl group) that is substituted with a heteroaryl group. Both “alkyl” and “heteroaryl” have been defined above.
- a heteroaralkyl is optionally substituted with one or more substituents such as alkyl (including carboxyalkyl, hydroxyalkyl, and haloalkyl such as trifluoromethyl), alkenyl, alkynyl, cycloalkyl, (cycloalkyl)alkyl, heterocycloalkyl, (heterocycloalkyl)alkyl, aryl, heteroaryl, alkoxy, cycloalkyloxy, heterocycloalkyloxy, aryloxy, heteroaryloxy, aralkyloxy, heteroaralkyloxy, aroyl, heteroaroyl, nitro, carboxy, alkoxycarbonyl, alkylcarbonyloxy, aminocarbonyl, alkylcarbonylamino, cycloalkylcarbonylamino, (cycloalkylalkyl)carbonylamino, arylcarbonylamino, aralkylcarbonylamino, (heterocycloal
- an "acyl” group refers to a formyl group or R x -
- C(O)- (such as alkyl-C(O)-, also referred to as “alkylcarbonyl”) where R x and "alkyl” have been defined previously.
- Acetyl and pivaloyl are examples of acyl groups.
- an “aroyl” or “heteroaroyl” refers to an aryl-C(O)- or a heteroaryl-C(O)-.
- the aryl and heteroaryl portion of the aroyl or heteroaroyl is optionally substituted as previously defined.
- an "alkoxy” group refers to an alkyl-O- group where
- alkyl has been defined previously.
- a "carbamoyl” group refers to a group having the structure -O-CO-NR X R Y or -NR X -CO-O-R Z wherein R x and R ⁇ have been defined above and R z can be aliphatic, aryl, araliphatic, heterocycloaliphatic, heteroaryl, or heteroaraliphatic .
- a "carboxy” group refers to -COOH, -COOR X , -
- haloaliphatic refers to an aliphatic group substituted with 1-3 halogen.
- haloalkyl includes the group -CF 3 .
- mercapto refers to -SH.
- a "sulfo" group refers to -SO 3 H or -SO 3 R X when used terminally or -S(O) 3 - when used internally.
- sulfamide refers to the structure -NR X -
- sulfonamide refers to the structure -S(O) 2 -
- sulfanyl group refers to -S-R x when used terminally and -S- when used internally, wherein R x has been defined above.
- sulfanyls include aliphatic-S-, cycloaliphatic-S-, aryl-S-, or the like.
- a "sulfinyl” group refers to -S(O)-R X when used terminally and -S(O)- when used internally, wherein R has been defined above.
- exemplary sulfinyl groups include aliphatic-S (O)-, aryl-S(O)-, (cycloaliphatic(aliphatic)) - S(O)-, cycloalkyl-S(O)-, heterocycloaliphatic-S(O)-, heteroaryl-S(O)-, or the like.
- a "sulfonyl” group refers to-S(O) 2 -R x when used terminally and -S(O) 2 - when used internally, wherein R x has been defined above.
- Exemplary sulfonyl groups include aliphatic-S(O) 2 -, aryl-S(O) 2 -, (cycloaliphatic(aliphatic))-S(O) 2 -, cycloaliphatic-S(O) 2 -, heterocycloaliphatic-S(O) 2 -, heteroaryl-S(O) 2 -, (cycloaliphatic(amido(aliphatic)))-S(O) 2 -or the like.
- a "sulfoxy" group refers to -O-SO-R X or -SO-O-R X , when used terminally and -O-S(O)- or -S(O)-O- when used internally, where R x has been defined above.
- halogen or halo group refers to fluorine, chlorine, bromine or iodine.
- alkoxycarbonyl which is encompassed by the term carboxy, used alone or in connection with another group refers to a group such as alkyl-O-C(O)-.
- alkoxyalkyl refers to an alkyl group such as alkyl-O-alkyl-, wherein alkyl has been defined above.
- aminoalkyl refers to the structure (R X ) 2 N- alkyl-.
- cyanoalkyl refers to the structure (NC)-alkyl-.
- urea refers to the structure -NR X -CO-
- NR Y R Z and a "thiourea" group refers to the structure -NR X -CS-NR Y R Z when used terminally and -NR X -CO-NR Y - or -NR X -CS-NR Y - when used internally, wherein R x , R ⁇ , and R z have been defined above.
- guanidine refers to the structure -
- the term "vicinal” refers to the placement of substituents on a group that includes two or more carbon atoms, wherein the substituents are attached to adjacent carbon atoms.
- the term "geminal” refers to the placement of substituents on a group that includes two or more carbon atoms, wherein the substituents are attached to the same carbon atom.
- terminal refers to the location of a group within a substituent.
- a group is terminal when the group is present at the end of the substituent not further bonded to the rest of the chemical structure.
- Carboxyalkyl i.e., R O(O)C-alkyl is an example of a carboxy group used terminally.
- a group is internal when the group is present in the middle of a substituent to at the end of the substituent bound to the rest of the chemical structure.
- Alkylcarboxy e.g., alkyl-C(O)O- or alkyl- OC(O)-
- alkylcarboxyaryl e.g., alkyl-C(O)O-aryl- or alkyl-O(CO)-aryl-
- cyclic group includes mono-, bi-, and tri-cyclic ring systems including cycloaliphatic, heterocycloaliphatic, aryl, or heteroaryl, each of which has been previously defined.
- bridged bicyclic ring system refers to a bicyclic heterocyclicalipahtic ring system or tricyclic cycloaliphatic ring system in which the rings are bridged.
- bridged bicyclic ring systems include, but are not limited to, adamantanyl, norbornanyl, bicyclo[3.2.1]octyl, bicyclo[2.2.2]octyl, bicyclo[3.3.1]nonyl, bicyclo[3.2.3]nonyl, 2-oxabicyclo[2.2.2]octyl, l-azabicyclo[2.2.2]octyl, 3- azabicyclo[3.2.1]octyl, and 2,6-dioxa-tricyclo[3.3.1.0 3 ' 7 ]nonyl.
- a bridged bicyclic ring system can be optionally substituted with one or more substituents such as alkyl (including carboxyalkyl, hydroxyalkyl, and haloalkyl such as trifluoromethyl), alkenyl, alkynyl, cycloalkyl, (cycloalkyl)alkyl, heterocycloalkyl, (heterocycloalkyl)alkyl, aryl, heteroaryl, alkoxy, cycloalkyloxy, heterocycloalkyloxy, aryloxy, heteroaryloxy, aralkyloxy, heteroaralkyloxy, aroyl, heteroaroyl, nitro, carboxy, alkoxycarbonyl, alkylcarbonyloxy, aminocarbonyl, alkylcarbonylamino, cycloalkylcarbonylamino, (cycloalkylalkyl)carbonylamino, arylcarbonylamino, aralkylcarbonylamino, (heter
- an "aliphatic chain” refers to a branched or straight aliphatic group (e.g., alkyl groups, alkenyl groups, or alkynyl groups).
- a straight aliphatic chain has the structure -[CH 2 ] V -, where v is 1-6.
- a branched aliphatic chain is a straight aliphatic chain that is substituted with one or more aliphatic groups.
- a branched aliphatic chain has the structure -[CHQ] V - where Q is hydrogen or an aliphatic group; however, Q shall be an aliphatic group in at least one instance.
- the term aliphatic chain includes alkyl chains, alkenyl chains, and alkynyl chains, where alkyl, alkenyl, and alkynyl are defined above.
- Each substituent of a specific group is further optionally substituted with one to three of halo, cyano, oxo, alkoxy, hydroxy, amino, nitro, aryl, haloalkyl, and alkyl.
- an alkyl group can be substituted with alkylsulfanyl and the alkylsulfanyl can be optionally substituted with one to three of halo, cyano, oxo, alkoxy, hydroxy, amino, nitro, aryl, haloalkyl, and alkyl.
- the cycloalkyl portion of a (cycloalkyl)carbonylamino can be optionally substituted with one to three of halo, cyano, alkoxy, hydroxy, nitro, haloalkyl, and alkyl.
- the two alkxoy groups can form a ring together with the atom(s) to which they are bound.
- an optionally substituted group can have a substituent at each substitutable position of the group, and when more than one position in any given structure can be substituted with more than one substituent selected from a specified group, the substituent can be either the same or different at every position.
- a ring substituent such as a heterocycloalkyl, can be bound to another ring, such as a cycloalkyl, to form a spiro- bicyclic ring system, e.g., both rings share one common atom.
- substituents envisioned by this invention are those combinations that result in the formation of stable or chemically feasible compounds.
- stable or chemically feasible refers to compounds that are not substantially altered when subjected to conditions to allow for their production, detection, and preferably their recovery, purification, and use for one or more of the purposes disclosed herein.
- a stable compound or chemically feasible compound is one that is not substantially altered when kept at a temperature of 40 °C or less, in the absence of moisture or other chemically reactive conditions, for at least a week.
- an effective amount is defined as the amount required to confer a therapeutic effect on the treated patient, and is typically determined based on age, surface area, weight, and condition of the patient.
- the interrelationship of dosages for animals and humans (based on milligrams per meter squared of body surface) is described by Freireich et al., Cancer Chemother. Rep., 50: 219 (1966).
- Body surface area may be approximately determined from height and weight of the patient. See, e.g., Scientific Tables, Geigy Pharmaceuticals, Ardsley, New York, 537 (1970).
- patient refers to a mammal, including a human.
- structures depicted herein are also meant to include all isomeric (e.g., enantiomeric, diastereomeric, and geometric (or conformational)) forms of the structure; for example, the R and S configurations for each asymmetric center, (Z) and (E) double bond isomers, and (Z) and (E) conformational isomers. Therefore, single stereochemical isomers as well as enantiomeric, diastereomeric, and geometric (or conformational) mixtures of the present compounds are within the scope of the invention. Unless otherwise stated, all tautomeric forms of the compounds of the invention are within the scope of the invention.
- structures depicted herein are also meant to include compounds that differ only in the presence of one or more isotopically enriched atoms.
- compounds having the present structures except for the replacement of hydrogen by deuterium or tritium, or the replacement of a carbon by a 13 C- or 14 C-enriched carbon are within the scope of this invention.
- Such compounds are useful, for example, as analytical tools or probes in biological assays.
- Each Ra is independently H, an optionally substituted aliphatic, an optionally substituted aryl, an optionally substituted aralkyl, an optionally substituted heteroaralkyl, an optionally substituted heteroaryl, an optionally substituted cycloaliphatic, or an optionally substituted cycloheteroaliphatic.
- Each Rb is independently an optionally substituted aliphatic, an optionally substituted aryl, an optionally substituted aralkyl, an optionally substituted heteroaralkyl, an optionally substituted heteroaryl, an optionally substituted cycloaliphatic,
- an optionally substituted cycloheteroaliphatic in which w is 1, 2, 3, 4, or 5 and the phenyl is optionally substituted with 1-4 of Re, or Ra and Rb together with the nitrogen atom to which they are bound form an optionally substituted heterocycloaliphatic, an optionally substituted heteroaryl.
- Each Rc is independently H, an optionally substituted heterocycloaliphatic, an optionally substituted cycloaliphatic, or an unsubstituted aliphatic.
- Each Rd is independently H, an optionally substituted aliphatic, an optionally substituted aryl, an optionally substituted aralkyl, an optionally substituted heteroaralkyl, an optionally substituted heteroaryl, an optionally substituted cycloaliphatic, an optionally substituted cycloheteroaliphatic, or Rc and Rd together with the nitrogen atom to which they are bound form an optionally substituted heterocycloaliphatic.
- Ring A is an aryl or heteroaryl, each optionally substituted with 1-4
- Each Re is independently carboxy, amino, nitro, alkylcarbonylamino, cycloalkylcarbonylamino, (cycloalkyl)alkylcarbonylamino, arylcarbonylamino, aralkylcarbonylamino, (heterocycloalkyl)carbonylamino, (heterocycloalkyl)alkylcarbonylamino, heteroarylcarbonylamino, heteroaralkylcarbonylamino, sulfonyl, sulfinyl, sulfanyl, sulfoxy, sulfamoyl, sulfamide, ketal, carbamoyl, cyano, halo, urea, thiourea, haloalkyl, or -Z-Rf, in which each alkyl, cycloalkyl, heterocycloalkyl, aryl, and heteroaryl portion of the Re substituents is optionally substitute
- Each Z is absent, -O-, or -S-.
- Each Rf is independently hydrogen, alkyl, carboxyalkyl, hydroxyalkyl, alkenyl, alkynyl, cycloalkyl, (cycloalkyl)alkyl, heterocycloalkyl, (heterocycloalkyl)alkyl, aryl, heteroaryl, aralkyl, heteroaralkyl, aroyl, heteroaroyl, alkoxycarbonyl, alkylcarbonyl, aminocarbonyl, or acyl, in which each alkyl, alkenyl, alkynyl, cycloalkyl, heterocycloalkyl, aryl, and heteroaryl portion of the Rf substituents is optionally substituted with 1-3 of Rg.
- Each Rg is independently halo, cyano, alkoxy, hydroxyl, nitro, haloalkyl, and alkyl.
- ring A is not a 3,4,5- trimethoxyphenyl when Rd is an alkyl substituted with 4-methyl-l-piperazinyl; ring A is not 7-chloro-2-(4-fluorophenyl)pyrazolo[l,5-a]pyridine-3-yl or 7-cyclopentylamino-2-(4- fluorophenyl)pyrazolo[l,5-a]pyridine-3-yl; Rd is not ⁇ l-[(3,5-difluorophenyl)methyl)]-2- hydroxy-4-(lH-pyrazol-3-yl)butyl ⁇ when Rc is H, Ra and Rb are both alkyl, and Ring A is oxazolyl.
- Transporter and CFTR activity have the structure of formula II:
- Ring A is not a 3,4,5-trimethoxy ⁇ henyl when Rd is an alkyl substituted with 4-methyl- 1 -piper azinyl .
- ABC Transporter and CFTR activity have the structure of formula III:
- ring B is an optionally substituted heterocycloaliphatic and the variables Rc, Rd, and Re are defined above.
- Embodiments of compounds of formula I, ⁇ , and III include the following aspects.
- Ring A [00208] Different aspects of Ring A include the following:
- Ring A is aryl, such as phenyl.
- Ring A is bicyclic aryl, such as naphthyl, and azulenyl. In a specific aspect, Ring A is naphthyl.
- Embodiments of the aspects in which Ring A is aryl include the following. Ring A is an aryl optionally substituted with 1-4 of Re. Ring A is an aryl substituted with at least one Re substituent. Ring A is an aryl substituted with at least one Re substituent ortho or meta relative to the point of attachment between Ring A and the pyrimidine. Ring A is an aryl substituted with at least one Re substituent ortho, para, or meta relative to the point of attachment between Ring A and the pyrimidine.
- Ring A is an aryl substituted with at least one Re substituent ortho relative to the point of attachment between Ring A and the pyrimidine.
- Ring A is an aryl substituted with at least one Re substituent para relative to the point of attachment between Ring A and the pyrimidine.
- Ring A is an aryl substituted with at least one Re substituent meta relative to the point of attachment between Ring A and the pyrimidine.
- Ring A is an aryl including at least two Re substituents.
- Ring A is an aryl including at least two Re substituents one of which is ortho relative to the point of attachment between Ring A and the pyrimidine.
- Ring A is heteroaryl.
- Ring A is a monocyclic heteroaryl, such as a pyrrolyl, furanyl, oxazolyl, thiazolyl, pyrazolyl, thiophenyl, pyridazinyl, pyrazinyl, pyrimidinyl, or pyridinyl.
- Ring A is thiophenyl, furanyl, pyrimidinyl, or pyridinyl.
- Ring A is thiophenyl.
- Ring A is a bicyclic heteroaryl, such as indolizinyl, indolyl, isoindolyl, indazolyl, benzimidazolyl, purinyl, isoquinolinyl, benzofuranyl, quinolinyl, benzothiophenyl, or benzodioxolanyl. Ring A is benzothiophenyl, benzodioxolanyl. Ring A is a heteroaryl optionally substituted with 1-4 of Re. Ring A is a heteroaryl substituted with at least one Re substituent. Ring A is an aryl substituted with at least one Re substituent ortho, para, or meta relative to the point of attachment between Ring A and the pyrimidine.
- Ring A is an aryl substituted with at least one Re substituent ortho relative to the point of attachment between Ring A and the pyrimidine.
- Ring A is an aryl substituted with at least one Re substituent para relative to the point of attachment between Ring A and the pyrimidine.
- Ring A is an aryl substituted with at least one Re substituent meta relative to the point of attachment between Ring A and the pyrimidine.
- Ring A is a heteroaryl including at least two Re substituents.
- Ring A is a heteroaryl including at least two Re substituents one of which is ortho relative to the point of attachment between Ring A and the pyrimidine.
- the Re substituents are each independently carboxy, amino, nitro, alkylcarbonylamino, cycloalkylcarbonylamino, (cycloalky ⁇ alkylcarbonylamino, arylcarbonylamino, aralkylcarbonylamino, (heterocycloalky ⁇ carbonylamino, (heterocycloalky ⁇ alkylcarbonylamino, heteroarylcarbonylamino, heteroaralkylcarbonylamino, sulfonyl, sulfinyl, sulfanyl, sulfoxy, sulfamoyl, sulfamide, ketal, or carbamoyl, cyano, halo, urea, thiourea, haloalkyl, in which each alkyl, cycloalkyl, heterocycloalkyl, aryl, and heteroaryl portion of the Re substituents is optionally substituted
- the Re substituents are each independently carboxy, nitro, cyano, halo, haloalkyl, in which each alkyl, cycloalkyl, heterocycloalkyl, aryl, and heteroaryl portion of the Re substituents is optionally substituted with 1-3 of halo, cyano, alkoxy, hydroxyl, nitro, haloalkyl, and alkyl.
- the Re substituents are each independently amino, alkylcarbonylamino, cycloalkylcarbonylamino, (cycloalkyl)alkylcarbonylamino, arylcarbonylamino, aralkylcarbonylamino, (heterocycloalkytycarbonylamino, (heterocycloalky ⁇ alkylcarbonylamino, heteroarylcarbonylamino, heteroaralkylcarbonylamino, urea, thiourea, in which each alkyl, cycloalkyl, heterocycloalkyl, aryl, and heteroaryl portion of the Re substituents is optionally substituted with 1-3 of halo, cyano, alkoxy, hydroxyl, nitro, haloalkyl, and alkyl.
- the Re substituents are each independently alkylsulfanyl, sulfoxy, sulfamoyl, sulfamide, ketal, or carbamoyl, in which each alkyl, cycloalkyl, heterocycloalkyl, aryl, and heteroaryl portion of the Re substituents is optionally substituted with 1-3 of halo, cyano, alkoxy, hydroxyl, nitro, haloalkyl, and alkyl.
- the Re substituents are independently -Z-Rf, in which each Z is absent, -O-, or -S-, and each Rf is independently hydrogen, alkyl, carboxyalkyl, hydroxyalkyl, alkenyl, alkynyl, cycloalkyl, (cycloalkyl)alkyl, heterocycloalkyl, (heterocycloalkyl)alkyl, aryl, heteroaryl, aralkyl, heteroaralkyl, aroyl, heteroaroyl, alkoxycarbonyl, alkylcarbonyl, aminocarbonyl, or acyl, in which each alkyl, alkenyl, alkynyl, cycloalkyl, heterocycloalkyl, aryl, and heteroaryl portion of the Rf substituents is optionally substituted with 1-3 of halo, cyano, alkoxy, hydroxyl, nitro, haloalkyl, and alky
- the Re substituents are independently -Z-Rf, in which Z is absent and each Rf is independently hydrogen, alkyl, carboxyalkyl, hydroxyalkyl, alkenyl, alkynyl, (cycloalkyl)alkyl, (heterocycloalkyl)alkyl, aralkyl, heteroaralkyl, aroyl, heteroaroyl, in which each alkyl, alkenyl, alkynyl, cycloalkyl, heterocycloalkyl, aryl, and heteroaryl portion of the Rf substituents is optionally substituted with 1-3 of halo, cyano, alkoxy, hydroxyl, nitro, haloalkyl, and alkyl.
- the Re substituents are independently -Z-Rf, in which each Z is absent and each Rf is independently cycloalkyl, heterocycloalkyl, aryl, heteroaryl, alkoxycarbonyl, alkylcarbonyl, aminocarbonyl, or acyl, in which each alkyl, alkenyl, alkynyl, cycloalkyl, heterocycloalkyl, aryl, and heteroaryl portion of the Rf substituents is optionally substituted with 1-3 of halo, cyano, alkoxy, hydroxyl, nitro, haloalkyl, and alkyl.
- the Re substituents are independently alkyl, hydroxyalkyl, haloalkyl, haloalkoxy, alkoxy, halo, hydroxy, alkoxycarbonyl, alkylcarbonylamino, aryloxy, sulfoxy, carboxy, acyl, or alkylcarbonyl.
- the Ring A Re substituents are independently chloro, bromo, phenoxy, -CF 3 , alkoxy (such as methoxy, ethoxy), -C(O)Oalkyl (such as -C(O)O-methyl, -C(O)O-ethyl, -C(O)O-propyl, and - C(O)O-isopropyl), alkyl (such as methyl, ethyl, propyl, butyl, and isopropyl), haloalkoxy (such as CF 3 O-), hydroxylalkyl (such as HO-methyl-, HO-ethyl-, and HO-propyl), alkylcarbonylamino (such as methyl-C(O)-NH-, ethyl-C(O)-NH-, propyl-C(O)-NH-, and isopropyl-C(O)-NH-), -S(O) 2 alkyl
- Ra Different aspects of Ra include the following:
- Ra is hydroxyalkyl, alkyloxyalkyl, (heterocycloalkyl)alkyl,
- Ra is H.
- Ra is an optionally substituted aliphatic, such as an optionally substituted alkyl, an optionally substituted alkenyl, or an optionally substituted alkynyl.
- Ra is an optionally substituted alkenyl.
- Ra is an alkenyl.
- Ra is propenyl, butenyl, or pentenyl.
- Ra is an alkenyl substituted with one or more of hydroxyl, amino, halo, cyano, oxo.
- Ra is an optionally substituted alkyl.
- Ra is an optionally substituted methyl, an optionally substituted ethyl, an optionally substituted propyl, an optionally substituted butyl, and optionally substituted pentyl.
- Ra is an alkyl substituted with one or more of hydroxyl, alkoxy, amino, halo, cyano, oxo.
- Ra is methyl substituted with one or more of hydroxyl, alkoxy, amino, halo, cyano, oxo.
- Ra is ethyl substituted with one or more of hydroxyl, alkoxy, amino, halo, cyano, oxo.
- Ra is propyl substituted with one or more of hydroxyl, alkoxy, amino, halo, cyano, oxo.
- Ra is butyl substituted with one or more of hydroxyl, alkoxy, amino, halo, cyano, oxo.
- Ra is a hydroxyl alkyl (such as HO-methyl, HO-ethyl, HO-butyl, and HO-propyl).
- Ra is an alkoxyalkyl (such as methoxymethyl-, methoxyethyl-, methyoxypropyl-, methyoxybutyl-, ethoxymethyl-, ethoxyethyl-, ethoxypropyl-, ethoxybutyl-, propoxymethyl-, propoxyethyl-, and propoxypropyl-.
- Ra is a cyanoalkyl (such as NC-methyl, NC-ethyl, NC-propyl, and NC-butyl).
- Ra is a carboxyalkyl (such as methyl-O(O)C-methyl-, methyl-O(O)C-ethyl-, methyl-O(O)C- propyl-, methyl-O(O)C-butyl-, ethyl-O(O)C-methyl-, ethyl-O(O)C-ethyl-, ethyl-O(O)C- propyl, ethyl-O(O)C-butyl, propyl-O(O)C-methyl-, ⁇ ropyl-O(O)C-ethyl, and propyl- O(O)C-propyl).
- Ra is an optionally substituted aryl, an optionally substituted aralkyl, an optionally substituted heteroaralkyl, an optionally substituted heteroaryl, an optionally substituted cycloaliphatic, or an optionally substituted cycloheteroaliphatic.
- Ra is an optionally substituted aralkyl (such as an optionally substituted benzyl and an optionally substituted phenethyl).
- Ra is an optionally substituted heteroaralkyl (such as an optionally substituted furylmethyl, an optionally substituted pyridinylmethyl, and an optionally substituted pyridinylethyl).
- Rb Different aspects of Rb include the following.
- Rb is an optionally substituted aliphatic such as an optionally substituted alkyl, and optionally substituted alkenyl, or an optionally substituted alkynyl.
- Rb is an optionally substituted alkenyl.
- Rb is an alkenyl.
- Rb is propenyl, butenyl, or pentenyl.
- Rb is an alkenyl substituted with one or more of hydroxyl, amino, halo, cyano, and oxo.
- Rb is an optionally substituted alkyl.
- Rb is an optionally substituted methyl, an optionally substituted ethyl, an optionally substituted propyl, an optionally substituted butyl, and optionally substituted pentyl.
- Rb is an alkyl substituted with one or more of hydroxyl, alkoxy, amino, halo, cyano, oxo.
- Rb is methyl substituted with one or more of hydroxyl, alkoxy, amino, halo, cyano, and oxo.
- Rb is ethyl substituted with one or more of hydroxyl, alkoxy, amino, halo, cyano, oxo.
- Rb is propyl substituted with one or more of hydroxyl, alkoxy, amino, halo, cyano, oxo.
- Rb is butyl substituted with one or more of hydroxyl, alkoxy, amino, halo, cyano, oxo.
- Rb is a hydroxyl alkyl (such as HO-methyl, HO-ethyl, HO-butyl, and HO-propyl).
- Rb is an alkoxyalkyl (such as methoxymethyl-, methoxyethyl-, methyoxypropyl-, methyoxybutyl-, ethoxymethyl-, ethoxyethyl-, ethoxypropyl-, ethoxybutyl-, propoxymethyl-, propoxyethyl-, and propoxypropyl-.
- Rb is cyanoalkyl (such as NC-methyl, NC-ethyl, NC-propyl, and NC-butyl).
- Rb is carboxyalkyl (such as methyl-O(O)C-methyl-, methyl-O(O)C-ethyl-, methyl-O(O)C- ⁇ ropyl-, methyl-O(O)C-butyl-, ethyl-O(O)C-methyl-, ethyl-O(O)C-ethyl-, ethyl-O(O)C- ⁇ ro ⁇ yl, ethyl-O(O)C-butyl, pro ⁇ yl-O(O)C-methyl-, propyl-O(O)C-ethyl, and propyl-O(O)C-propyl).
- carboxyalkyl such as methyl-O(O)C-methyl-, methyl-O(O)C-ethyl-, methyl-O(O)C- ⁇ ropyl-, methyl-O(O)C-butyl-, ethyl-O(O)
- Rb is an optionally substituted aryl, an optionally substituted aralkyl, an optionally substituted heteroaralkyl, an optionally substituted heteroaryl, an optionally substituted cycloaliphatic, or an optionally substituted cycloheteroaliphatic.
- Rb is an optionally substituted aralkyl (such as an optionally substituted benzyl and an optionally substituted phenethyl).
- Rb is an optionally substituted heteroaralkyl (such as an optionally substituted furylmethyl, an optionally substituted pyridinylmethyl, and an optionally substituted pyridinylethyl).
- Rb is in which w is 1, 2, 3, 4, or 5 and the
- Rb is in which w is 1
- Rb is in which w is 3 and the phenyl is optionally substituted with 1-4 of Re.
- Ra and Rb include the following.
- Ra and Rb together with the nitrogen atom to which they are bound, form an optionally substituted heterocycloaliphatic or an optionally substituted heteroaryl.
- Ra and Rb, together with the nitrogen atom to which they are bound form an optionally substituted heterocycloaliphatic (such as an optionally substituted azacyclooctane, an optionally substituted azepinyl, an optionally substituted piperidine, an optionally substituted pyrrolidine, an optionally substituted tetrahydropyridine, an optionally substituted pyrroline, an optionally substituted piperazine, an optionally substituted azetidine, an optionally substituted morpholino, an optionally substituted thiomorpholino, an optionally substituted perhydroquinoline, an optionally substituted tetrahydroisoquinoline, and an optionally substituted thiapyrrolidine).
- an optionally substituted heterocycloaliphatic such as an optionally substituted azacyclooctane, an
- Ra and Rb together with the nitrogen atom to which they are bound, form an optionally substituted 8 membered heterocycloaliphatic.
- Ra and Rb together with the nitrogen atom to which they are bound, form an optionally substituted 7 membered heterocycloaliphatic.
- Ra and Rb, together with the nitrogen atom to which they are bound form an optionally substituted 5 membered heterocycloaliphatic.
- Ra and Rb together with the nitrogen atom to which they are bound, form a heterocycloaliphatic substituted with 1-3 of halo, haloalkyl, alkyl, alkyloxycarbonyl, alkylcarbonyl, aminocarbonyl, hydroxyalkyl, sulfoxy, sulfanyl, sulfonyl, sulfinyl, an optionally substituted aryl, an optionally substituted alkoxy, an optionally substituted aralkyl, an optionally aroyl, an optionally substituted heterocycloaliphatic, or an optionally substituted heteroaryl.
- Ra and Rb together with the nitrogen atom to which they are bound, form a heterocycloaliphatic substituted with 1-3 of aryl (such as phenyl), acetyl, aralkyl (such as benzyl), hydroxyalkyl (such as HO-methyl and HO-ethyl), heterocycloaliphatic (such as dioxolanyl or 2-oxo-l,3 ⁇ dihydrobenzoimidazol-l-yl), an optionally substituted heteroaryl (such as 2-oxo-benzimidazolyl), phenyl-C(O)-, 4-halo-phenyl-C(O)-, an optionally substituted phenyl (such as 4-cyanophenyl-, 4-hydroxyphenyl), and phenylS(O) 2 -.
- aryl such as phenyl
- acetyl such as acetyl
- aralkyl such as benzyl
- Ra and Rb together with the nitrogen atom to which they are bound, form an optionally substituted heteroaryl (such as imidazoline, pyrrole, pyrazole, tetrahy droquinoline) .
- an optionally substituted heteroaryl such as imidazoline, pyrrole, pyrazole, tetrahy droquinoline
- Ra and Rb are both optionally substituted aliphatic. Ra and Rb are both optionally substituted alkyl. Ra and Rb are both alkyl. Ra and Rb are both ethyl.
- both Ra and Rb are H.
- Rd Different aspects of Rd include the following.
- Rd is H or an optionally substituted aliphatic.
- Rd is H.
- Rd is an optionally substituted alkyl (such as an optionally substituted methyl, an optionally substituted ethyl, an optionally substituted propyl, and an optionally substituted butyl).
- Rd is methyl, ethyl, propyl, isopropyl, or butyl.
- Rd is an optionally substituted aralkyl (such as an optionally substituted benzyl and an optionally substituted phenethyl).
- Rd is an optionally substituted heteroaralkyl (such as an optionally substituted furylmethyl, an optionally substituted pyridinylmethyl, and an optionally substituted pyridinylethyl).
- Rd is an optionally substituted heteroaryl (such as an optionally substituted pyridinyl, an optionally substituted pyrrolyl, and an optionally substituted furyl).
- Rd is an optionally substituted aryl (such as an optionally substituted phenyl).
- Rd is an optionally substituted cycloaliphatic (such as an optionally substituted cyclopentyl and an optionally substituted cyclohexyl).
- Rd is an optionally substituted heterocycloaliphatic (such as an optionally substituted piperidine).
- Rc Different aspects of Rc include the following.
- Rc is H.
- Rc is an optionally substituted heterocycloaliphatic (such as an optionally substituted piperidine).
- Rc is an optionally substituted cycloaliphatic (such as an optionally substituted cyclopentyl and an optionally substituted cyclohexyl).
- Rc is an unsubstituted aliphatic.
- Rc is an unsubstituted alkyl.
- Rc is methyl, ethyl, propyl, or butyl.
- Rc and Rd include the following.
- Rc and Rd together with the nitrogen atom to which they are bound form an optionally substituted heterocycloaliphatic.
- Rc and Rd are both H.
- CFTR activity are based upon generic formula I and subgeneric formulae II and Ht may include different combinations of each aspect and embodiment described above.
- specific compounds or subgeneric groupings of compounds may include different combinations of the aspects described above.
- Transporter and/or CFTR activity have the structure listed in Table 1.
- step a of scheme 1 reaction of the ketone with diethyl oxalacetate in the presence of a base, such as sodium ethoxide, and an organic solvent such as ethanol, provides the dioxobutanoic acid.
- a base such as sodium ethoxide
- an organic solvent such as ethanol
- step c Refluxing the dioxobutanoic acid, in step b, in the presence of a base, such as EtONa, and 2-methylisothiourea followed by and organic extraction and acid wash provides the 2-(methylthio)pyrimidine-4-carboxylic acid.
- step c the carboxylic acid is converted to the amide using standard amine coupling methodologies, such as with PyBOP or EDC, in the presence of the appropriate amine, e.g., NHRcRd.
- step oxidation of the thiol with an oxidizing agent such as m-CPBA or H 2 O 2 in CH 3 CO 2 H provides the sulfinyl or sulfonyl compound.
- step e reaction of the sulfinyl or sulfonyl compound with the appropriate amine, HNRaRb, in an organic solvent such as dioxane provides the compound of formula I.
- step a of scheme 2 reaction of diethyl diethyl oxalacetate and methylisothiourea provides the 2-methylthio-6-oxo-l,6-dihydro-pyrimidin-4-yl carboxylic acid.
- step b refluxing the carboxylic acid with tionyl chloride in an organic solvent such as tolune, followed by treatment with methanol provides the 2-methylthio-6-chloro- pyrimidin-4-yl carboxylic acid methyl ester.
- step c the methyl ester is converted to the amide using the appropriate amine, such as NHRcRd.
- step d the boronic acid derivative of Ring A (such as [Ring A]-B(OR) 2 , is coupled to the pyrimidine-4-carboxylic amide using a coupling reagent, such as PdCl 2 (dppf).
- a coupling reagent such as PdCl 2 (dppf).
- the desired compound is produced via synthetic steps e and f, which are similar to steps d and e in scheme 1.
- compositions comprising any of the compounds as described herein, and optionally comprise a pharmaceutically acceptable carrier, adjuvant or vehicle.
- these compositions optionally further comprise one or more additional therapeutic agents.
- a pharmaceutically acceptable derivative or a prodrug includes, but is not limited to, pharmaceutically acceptable salts, esters, salts of such esters, or any other adduct or derivative which upon administration to a patient in need is capable of providing, directly or indirectly, a compound as otherwise described herein, or a metabolite or residue thereof.
- the term "pharmaceutically acceptable salt” refers to those salts which are, within the scope of sound medical judgment, suitable for use in contact with the tissues of humans and lower animals without undue toxicity, irritation, allergic response and the like, and are commensurate with a reasonable benefit/risk ratio.
- a “pharmaceutically acceptable salt” means any non-toxic salt or salt of an ester of a compound of this invention that, upon administration to a recipient, is capable of providing, either directly or indirectly, a compound of this invention or an inhibitorily active metabolite or residue thereof.
- compositions of this invention include those derived from suitable inorganic and organic acids and bases.
- Examples of pharmaceutically acceptable, nontoxic acid addition salts are salts of an amino group formed with inorganic acids such as hydrochloric acid, hydrobromic acid, phosphoric acid, sulfuric acid and perchloric acid or with organic acids such as acetic acid, oxalic acid, maleic acid, tartaric acid, citric acid, succinic acid or malonic acid or by using other methods used in the art such as ion exchange.
- inorganic acids such as hydrochloric acid, hydrobromic acid, phosphoric acid, sulfuric acid and perchloric acid
- organic acids such as acetic acid, oxalic acid, maleic acid, tartaric acid, citric acid, succinic acid or malonic acid or by using other methods used in the art such as ion exchange.
- salts include adipate, alginate, ascorbate, aspartate, benzenesulfonate, benzoate, bisulfate, borate, butyrate, camphorate, camphorsulfonate, citrate, cyclopentanepropionate, digluconate, dodecylsulfate, ethanesulfonate, formate, fumarate, glucoheptonate, glycerophosphate, gluconate, hemisulfate, heptanoate, hexanoate, hydroiodide, 2-hydroxy-ethanesulfonate, lactobionate, lactate, laurate, lauryl sulfate, malate, maleate, malonate, methanesulfonate, 2- naphthalenesulfonate, nicotinate, nitrate, oleate, oxalate, palmitate, pamoate, pectinate
- Salts derived from appropriate bases include alkali metal, alkaline earth metal, ammonium and N + (C 1-4 alkyl) 4 salts.
- This invention also envisions the quaternization of any basic nitrogen-containing groups of the compounds disclosed herein. Water or oil-soluble or dispersable products may be obtained by such quaternization.
- Representative alkali or alkaline earth metal salts include sodium, lithium, potassium, calcium, magnesium, and the like.
- Further pharmaceutically acceptable salts include, when appropriate, nontoxic ammonium, quaternary ammonium, and amine cations formed using counterions such as halide, hydroxide, carboxylate, sulfate, phosphate, nitrate, loweralkyl sulfonate and aryl sulfonate.
- the pharmaceutically acceptable compositions of the present invention additionally comprise a pharmaceutically acceptable carrier, adjuvant, or vehicle, which, as used herein, includes any and all solvents, diluents, or other liquid vehicle, dispersion or suspension aids, surface active agents, isotonic agents, thickening or emulsifying agents, preservatives, solid binders, lubricants and the like, as suited to the particular dosage form desired.
- a pharmaceutically acceptable carrier, adjuvant, or vehicle which, as used herein, includes any and all solvents, diluents, or other liquid vehicle, dispersion or suspension aids, surface active agents, isotonic agents, thickening or emulsifying agents, preservatives, solid binders, lubricants and the like, as suited to the particular dosage form desired.
- Remington's Pharmaceutical Sciences, Sixteenth Edition, E. W. Martin (Mack Publishing Co., Easton, Pa., 1980) discloses various carriers used in formulating pharmaceutically acceptable compositions
- any conventional carrier medium is incompatible with the compounds of the invention, such as by producing any undesirable biological effect or otherwise interacting in a deleterious manner with any other component(s) of the pharmaceutically acceptable composition, its use is contemplated to be within the scope of this invention.
- materials which can serve as pharmaceutically acceptable carriers include, but are not limited to, ion exchangers, alumina, aluminum stearate, lecithin, serum proteins, such as human serum albumin, buffer substances such as phosphates, glycine, sorbic acid, or potassium sorbate, partial glyceride mixtures of saturated vegetable fatty acids, water, salts or electrolytes, such as protamine sulfate, disodium hydrogen phosphate, potassium hydrogen phosphate, sodium chloride, zinc salts, colloidal silica, magnesium trisilicate, polyvinyl pyrrolidone, polyacrylates, waxes, polyethylene-polyoxypropylene-block polymers, wool fat, sugars such as lactose, glucose and sucrose; starches such as corn starch and potato starch; cellulose and its derivatives such as sodium carboxymethyl cellulose, ethyl cellulose and cellulose acetate; powdered tragacanth; malt; gelatin; talc
- the present invention provides a method of treating a condition, disease, or disorder implicated by ABC transporter activity.
- the present invention provides a method of treating a condition, disease, or disorder implicated by a deficiency of ABC transporter activity, the method comprising administering a composition comprising a compound of formula (I) to a subject, preferably a mammal, in need thereof.
- the present invention provides a method of treating Cystic fibrosis, Hereditary emphysema, Hereditary hemochromatosis, Coagulation-Fibrinolysis deficiencies, such as Protein C deficiency, Type 1 hereditary angioedema, Lipid processing deficiencies, such as Familial hypercholesterolemia, Type 1 chylomicronemia, Abetalipoproteinemia, Lysosomal storage diseases, such as I-cell disease/Pseudo-Hurler, Mucopolysaccharidoses, Sandhof/Tay-Sachs, Crigler-Najjar type II, Polyendocrinopathy/Hyperinsulemia, Diabetes mellitus, Laron dwarfism, Myleoperoxidase deficiency, Primary hypoparathyroidism, Melanoma, Glycanosis CDG type 1, Hereditary emphysema, Congenital hyperthyroidism, Ostectivosis CDG type
- the present invention provides a method of treating cystic fibrosis comprising the step of administering to said mammal a composition comprising the step of administering to said mammal an effective amount of a composition comprising a compound of formula (I), or a preferred embodiment thereof as set forth above.
- an "effective amount" of the compound or pharmaceutically acceptable composition is that amount effective for treating or lessening the severity of one or more of Cystic fibrosis, Hereditary emphysema, Hereditary hemochromatosis, Coagulation-Fibrinolysis deficiencies, such as Protein C deficiency, Type 1 hereditary angioedema, Lipid processing deficiencies, such as Familial hypercholesterolemia, Type 1 chylomicronemia, Abetalipoproteinemia, Lysosomal storage diseases, such as I-cell disease/Pseudo-Hurler, Mucopolysaccharidoses, Sandhof/Tay- Sachs, Crigler-Najjar type ⁇ , Polyendocrinopathy/Hyperinsulemia, Diabetes mellitus, Laron dwarfism, Myleoperoxidase deficiency, Primary hypoparathyroidism, Melanoma, Glycanosis CDG type 1, Heredit
- the compounds and compositions, according to the method of the present invention may be administered using any amount and any route of administration effective for treating or lessening the severity of one or more of Cystic fibrosis, Hereditary emphysema, Hereditary hemochromatosis, Coagulation-Fibrinolysis deficiencies, such as Protein C deficiency, Type 1 hereditary angioedema, Lipid processing deficiencies, such as Familial hypercholesterolemia, Type 1 chylomicronemia, Abetalipoproteinemia, Lysosomal storage diseases, such as I-cell disease/Pseudo-Hurler, Mucopolysaccharidoses, Sandhof/Tay-Sachs, Crigler-Najjar type II, Polyendocrinopathy/Hyperinsulemia, Diabetes mellitus, Laron dwarfism, Myleoperoxidase deficiency, Primary hypoparathyroidism, Melanoma, Glycanosis
- the exact amount required will vary from subject to subject, depending on the species, age, and general condition of the subject, the severity of the infection, the particular agent, its mode of administration, and the like.
- the compounds of the invention are preferably formulated in dosage unit form for ease of administration and uniformity of dosage.
- dosage unit form refers to a physically discrete unit of agent appropriate for the patient to be treated. It will be understood, however, that the total daily usage of the compounds and compositions of the present invention will be decided by the attending physician within the scope of sound medical judgment.
- the specific effective dose level for any particular patient or organism will depend upon a variety of factors including the disorder being treated and the severity of the disorder; the activity of the specific compound employed; the specific composition employed; the age, body weight, general health, sex and diet of the patient; the time of administration, route of administration, and rate of excretion of the specific compound employed; the duration of the treatment; drugs used in combination or coincidental with the specific compound employed, and like factors well known in the medical arts.
- patient means an animal, preferably a mammal, and most preferably a human.
- compositions of this invention can be administered to humans and other animals orally, rectally, parenterally, intracisternally, intravaginally, intraperitoneally, topically (as by powders, ointments, or drops), bucally, as an oral or nasal spray, or the like, depending on the severity of the infection being treated.
- the compounds of the invention may be administered orally or parenterally at dosage levels of about 0.01 mg/kg to about 50 mg/kg and preferably from about 1 mg/kg to about 25 mg/kg, of subject body weight per day, one or more times a day, to obtain the desired therapeutic effect.
- Liquid dosage forms for oral administration include, but are not limited to, pharmaceutically acceptable emulsions, microemulsions, solutions, suspensions, syrups and elixirs.
- the liquid dosage forms may contain inert diluents commonly used in the art such as, for example, water or other solvents, solubilizing agents and emulsifiers such as ethyl alcohol, isopropyl alcohol, ethyl carbonate, ethyl acetate, benzyl alcohol, benzyl benzoate, propylene glycol, 1,3- butylene glycol, dimethylformamide, oils (in particular, cottonseed, groundnut, corn, germ, olive, castor, and sesame oils), glycerol, tetrahydrofurfuryl alcohol, polyethylene glycols and fatty acid esters of sorbitan, and mixtures thereof.
- the oral compositions can also include
- Injectable preparations for example, sterile injectable aqueous or oleaginous suspensions may be formulated according to the known art using suitable dispersing or wetting agents and suspending agents.
- the sterile injectable preparation may also be a sterile injectable solution, suspension or emulsion in a nontoxic parenterally acceptable diluent or solvent, for example, as a solution in 1,3-butanediol.
- the acceptable vehicles and solvents that may be employed are water, Ringer's solution, U.S. P. and isotonic sodium chloride solution.
- sterile, fixed oils are conventionally employed as a solvent or suspending medium.
- any bland fixed oil can be employed including synthetic mono- or diglycerides.
- fatty acids such as oleic acid are used in the preparation of injectables.
- the injectable formulations can be sterilized, for example, by filtration through a bacterial-retaining filter, or by incorporating sterilizing agents in the form of sterile solid compositions which can be dissolved or dispersed in sterile water or other sterile injectable medium prior to use.
- the rate of compound release can be controlled.
- biodegradable polymers include poly(orthoesters) and ⁇ oly(anhydrides).
- Depot injectable formulations are also prepared by entrapping the compound in liposomes or microemulsions that are compatible with body tissues.
- compositions for rectal or vaginal administration are preferably suppositories which can be prepared by mixing the compounds of this invention with suitable non-irritating excipients or carriers such as cocoa butter, polyethylene glycol or a suppository wax which are solid at ambient temperature but liquid at body temperature and therefore melt in the rectum or vaginal cavity and release the active compound.
- suitable non-irritating excipients or carriers such as cocoa butter, polyethylene glycol or a suppository wax which are solid at ambient temperature but liquid at body temperature and therefore melt in the rectum or vaginal cavity and release the active compound.
- Solid dosage forms for oral administration include capsules, tablets, pills, powders, and granules.
- the active compound is mixed with at least one inert, pharmaceutically acceptable excipient or carrier such as sodium citrate or dicalcium phosphate and/or a) fillers or extenders such as starches, lactose, sucrose, glucose, mannitol, and silicic acid, b) binders such as, for example, carboxymethylcellulose, alginates, gelatin, polyvinylpyrrolidinone, sucrose, and acacia, c) humectants such as glycerol, d) disintegrating agents such as agar-agar, calcium carbonate, potato or tapioca starch, alginic acid, certain silicates, and sodium carbonate, e) solution retarding agents such as paraffin, f) absorption accelerators such as quaternary ammonium compounds, g) wetting agents such as, for example, cetyl
- Solid compositions of a similar type may also be employed as fillers in soft and hard-filled gelatin capsules using such excipients as lactose or milk sugar as well as high molecular weight polyethylene glycols and the like.
- the solid dosage forms of tablets, dragees, capsules, pills, and granules can be prepared with coatings and shells such as enteric coatings and other coatings well known in the pharmaceutical formulating art. They may optionally contain opacifying agents and can also be of a composition that they release the active ingredient(s) only, or preferentially, in a certain part of the intestinal tract, optionally, in a delayed manner. Examples of embedding compositions that can be used include polymeric substances and waxes. Solid compositions of a similar type may also be employed as fillers in soft and hard-filled gelatin capsules using such excipients as lactose or milk sugar as well as high molecular weight polethylene glycols and the like.
- the active compounds can also be in microencapsulated form with one or more excipients as noted above.
- the solid dosage forms of tablets, dragees, capsules, pills, and granules can be prepared with coatings and shells such as enteric coatings, release controlling coatings and other coatings well known in the pharmaceutical formulating art.
- the active compound may be admixed with at least one inert diluent such as sucrose, lactose or starch.
- Such dosage forms may also comprise, as is normal practice, additional substances other than inert diluents, e.g., tableting lubricants and other tableting aids such a magnesium stearate and microcrystalline cellulose.
- the dosage forms may also comprise buffering agents. They may optionally contain opacifying agents and can also be of a composition that they release the active ingredient(s) only, or preferentially, in a certain part of the intestinal tract, optionally, in a delayed manner.
- buffering agents include polymeric substances and waxes.
- Dosage forms for topical or transdermal administration of a compound of this invention include ointments, pastes, creams, lotions, gels, powders, solutions, sprays, inhalants or patches.
- the active component is admixed under sterile conditions with a pharmaceutically acceptable carrier and any needed preservatives or buffers as may be required.
- Ophthalmic formulation, eardrops, and eye drops are also contemplated as being within the scope of this invention.
- the present invention contemplates the use of transdermal patches, which have the added advantage of providing controlled delivery of a compound to the body.
- Such dosage forms are prepared by dissolving or dispensing the compound in the proper medium.
- Absorption enhancers can also be used to increase the flux of the compound across the skin. The rate can be controlled by either providing a rate controlling membrane or by dispersing the compound in a polymer matrix or gel.
- the compounds of the invention are useful as modulators of ABC transporters.
- the compounds and compositions are particularly useful for treating or lessening the severity of a disease, condition, or disorder where hyperactivity or inactivity of ABC transporters is implicated in the disease, condition, or disorder.
- hyperactivity or inactivity of an ABC transporter is implicated in a particular disease, condition, or disorder
- the disease, condition, or disorder may also be referred to as a "ABC transporter-mediated disease, condition or disorder”.
- the present invention provides a method for treating or lessening the severity of a disease, condition, or disorder where hyperactivity or inactivity of an ABC transporter is implicated in the disease state.
- the compounds and pharmaceutically acceptable compositions of the present invention can be employed in combination therapies, that is, the compounds and pharmaceutically acceptable compositions can be administered concurrently with, prior to, or subsequent to, one or more other desired therapeutics or medical procedures.
- the particular combination of therapies (therapeutics or procedures) to employ in a combination regimen will take into account compatibility of the desired therapeutics and/or procedures and the desired therapeutic effect to be achieved.
- the therapies employed may achieve a desired effect for the same disorder (for example, an inventive compound may be administered concurrently with another agent used to treat the same disorder), or they may achieve different effects (e.g., control of any adverse effects).
- additional therapeutic agents that are normally administered to treat or prevent a particular disease, or condition are known as "appropriate for the disease, or condition, being treated”.
- the amount of additional therapeutic agent present in the compositions of this invention will be no more than the amount that would normally be administered in a composition comprising that therapeutic agent as the only active agent.
- the amount of additional therapeutic agent in the presently disclosed compositions will range from about 50% to 100% of the amount normally present in a composition comprising that agent as the only therapeutically active agent.
- the present invention in another aspect, includes a composition for coating an implantable device comprising a compound of the present invention as described generally above, and in classes and subclasses herein, and a carrier suitable for coating said implantable device.
- the present invention includes an implantable device coated with a composition comprising a compound of the present invention as described generally above, and in classes and subclasses herein, and a carrier suitable for coating said implantable device.
- Suitable coatings and the general preparation of coated implantable devices are described in US Patents 6,099,562; 5,886,026; and 5,304,121; hereby incorporated by reference.
- the coatings are typically biocompatible polymeric materials such as a hydrogel polymer, polymethyldisiloxane, polycaprolactone, polyethylene glycol, polylactic acid, ethylene vinyl acetate, and mixtures thereof.
- the coatings may optionally be further covered by a suitable topcoat of fluorosilicone, polysaccarides, polyethylene glycol, phospholipids or combinations thereof to impart controlled release characteristics in the composition.
- Another aspect of the invention relates to modulating ABC transporter activity in a biological sample or a patient (e.g., in vitro or in vivo), which method comprises administering to the patient, or contacting said biological sample with a compound of formula I or a composition comprising said compound.
- biological sample includes, without limitation, cell cultures or extracts thereof; biopsied material obtained from a mammal or extracts thereof; and blood, saliva, urine, feces, semen, tears, or other body fluids or extracts thereof.
- Modulation of ABC transporter activity in a biological sample is useful for a variety of purposes that are known to one of skill in the art. Examples of such purposes include, but are not limited to, the study of ABC transporters in biological and pathological phenomena; and the comparative evaluation of new modulators of ABC transporters.
- a method of modulating activity of an anion channel in vitro or in vivo comprising the step of contacting said channel with a compound of formula (I).
- the anion channel is a chloride channel or a bicarbonate channel. In other preferred embodiments, the anion channel is a chloride channel.
- the present invention provides a method of increasing the number of functional ABC transporters in a membrane of a cell, comprising the step of contacting said cell with a compound of formula (I).
- the term "functional ABC transporter” as used herein means an ABC transporter that is capable of transport activity.
- said functional ABC transporter is CFTR.
- the activity of the ABC transporter is measured by measuring the transmembrane voltage potential.
- Means for measuring the voltage potential across a membrane in the biological sample may employ any of the known methods in the art, such as optical membrane potential assay or other electrophysiological methods.
- optical membrane potential assay utilizes voltage-sensitive
- These voltage sensitive assays are based on the change in fluorescence resonant energy transfer (FRET) between the membrane-soluble, voltage- sensitive dye, DiSBAC 2 (3), and a fluorescent phospholipid, CC2-DMPE, which is attached to the outer leaflet of the plasma membrane and acts as a FRET donor.
- FRET fluorescence resonant energy transfer
- V m fluorescent phospholipid
- the changes in fluorescence emission can be monitored using VIPRTM ⁇ , which is an integrated liquid handler and fluorescent detector designed to conduct cell- based screens in 96- or 384-well microtiter plates.
- the present invention provides a kit for use in measuring the activity of a ABC transporter or a fragment thereof in a biological sample in vitro or in vivo comprising (i) a composition comprising a compound of formula (I) or any of the above embodiments; and (ii) instructions for a.) contacting the composition with the biological sample and b.) measuring activity of said ABC transporter or a fragment thereof.
- the kit further comprises instructions for a.) contacting an additional composition with the biological sample; b.) measuring the activity of said ABC transporter or a fragment thereof in the presence of said additional compound, and c.) comparing the activity of the ABC transporter in the presence of the additional compound with the density of the ABC transporter in the presence of a composition of formula (I).
- the kit is used to measure the density of CFTR.
- Step a 4-(2-methoxyphenyl)-2,4-dioxobutanoic acid
- Step b 6-(2-methoxyphenyl)-2-(methylthio)pyrimidine-4- carboxylic acid
- Step d 6-(2-methoxyphenyl)-2-(methylsulfinyl)pyrimidine-4- carboxamide and 6-(2-methoxyphenyl)-2-(methylsulfonyl)pyrimidine-4-carboxamide
- n 1 , 2
- 6-(2-methoxyphenyl)-2-(methylthio)pyrimidine-4- carboxamide (2.75 g, 8.5 mmol) in 5 mL of DCM was added mCPBA (2.3 g, 10.2 mmol, 77 % by wt., remainder 3-chlorobenzoic acid and water).
- the sulfone is obtained as a primary product when excess oxidizing agent, mCPBA, is used.
- Step e 2-(dimethylamino)-6-(2-methoxyphenyl)pyrimidine-4- carboxamide (192)
- 6-(2-Methoxyphenyl)-2-(methylsulfinyl)pyrimidine-4-carboxamide 46 mg, 0.15 mmol
- 1,4-dioxane 2 mL
- DIPEA 80 ⁇ L, 0.45 mmol
- dimethylamine hydrochloride 26 mg, 0.3 mmol
- the vial was sealed and heated at 85 0 C for two days. After the reaction solution cooled to room temperature, the solvent was removed under vacuum in a Savant SpeedVac. The resulting residue was purified by Prep. HPLC.
- EXAMPLE 2 2-(iV * -methylphenethylamino)-6-phenylpyrimidine-4- carboxamide.
- Step a 2,4-dioxo-4-phenylbutanoic acid
- Step b 2-methylsulfanyl-6-phenylpyrimidine-4-carboxylic acid.
- Step c 2-(methylthio)-6-phenylpyrimidine-4-carboxamide
- ⁇ f-Methylmorpholine (2.31 mL, 21 mmol) was added dropwise by syringe to a mixture of 2-methylsulfanyl-6-phenylpyrimidine-4-carboxylic acid (3.45 g, 14 mmol), ammonium chloride (4.27 g, 80 mmol), HOBt (2.84 g, 21 mmol), and EDC (4.0 g, 21 mmol) in DMF (40 mL) at room temperature. The reaction solution was stirred at room temperature for 3 h before the DMF was removed by rotary evaporation.
- Step d 2-(methanesulfonyl)-6-phenylpyrimidine-4-carboxamide
- Step e 2-(iV-methylphenethylamino)-6-phenylpyrimidine-4- carboxamide (title compound).
- Step a 2-methylsulfanyl-6-oxo-l,6-dihydro-pyrimidine-4- carboxylic acid
- Neat diethyl oxalacetate (23.5 g, 125 mmol) was added to a solution of sodium hydroxide (15 g, 0.375 mol, 3 eq) in water (150 mL), giving a yellow solution.
- Solid S- methylisothiourea sulfate (17.4 g, 62.5 mmol, 0.5 eq) was added to the stirred solution.
- the mixture was stirred 15 hours.
- Concentrated HCl 40 mL, 0.48 mol
- Step b 6-chloro-2-methylsulfanyl-pyrimidine-4-carboxylic acid methyl ester
- Step c 6-chloro-2-methylsulfanyl-pyrimidine-4-carboxylic acid amide
- Step d 6-(2,6-dimethoxy-phenyl)-2-methylsulfanyl-pyrimidine-4- carboxylic acid amide
- the vial was charged with a solution of the 6- chloro-2-methylsulfanyl-pyrimidine-4-carboxylic acid amide (122 mg, 0.6 mmol) in degassed OMFfOME (1/1, 4.5 mL), and a degassed aqueous 1 M solution of potassium phosphate (1.0 mL, 1 mmol, 1.7 eq.).
- the vial was sealed, withdrawn from the glove box, and agitated in an incubator shaker at 75 0 C for 16 hours.
- Step e 6-(2,6-dimethoxy-phenyl)-2-methanesulfonyl-pyrimidine-4- carboxylic acid amide
- Step f 2-diethylamino-6-(2,6-dimethoxy-phenyl)-pyrirnidine-4- carboxylic acid amide
- TABLE 1 The remaining compounds described in TABLE 1 were produced using the procedures described herein along with known synthetic methods.
- TABLE 2 includes physical data characterizing each synthesized compound.
- the optical membrane potential assay utilized voltage-sensitive FRET sensors described by Gonzalez and Tsien (SeO 1 Gonzalez, J. E. and R. Y. Tsien (1995) "Voltage sensing by fluorescence resonance energy transfer in single cells” Biophvs J 69(4): 1272-80, and Gonzalez, J. E. and R. Y. Tsien (1997) “Improved indicators of cell membrane potential that use fluorescence resonance energy transfer” Chem Biol 4(4): 269-77) in combination with instrumentation for measuring fluorescence changes such as the Voltage/Ion Probe Reader (VIPR) (See, Gonzalez, J. E., K. Oades, et al. (1999) "Cell-based assays and instrumentation for screening ion-channel targets” Drug Discov Today 4(9): 431-439).
- VIPR Voltage/Ion Probe Reader
- Chloride-free bath solution Chloride salts in Bath Solution #1 are substituted with gluconate salts.
- CC2-DMPE Prepared as a 10 mM stock solution in
- DiSBAC 2 (3) Prepared as a 10 mM stock in DMSO and stored at -
- NIH3T3 mouse fibroblasts stably expressing ⁇ F508-CFTR are used for optical measurements of membrane potential.
- the cells are maintained at 37 0 C in 5% CO 2 and 90 % humidity in Dulbecco's modified Eagle's medium supplemented with 2 mM glutamine, 10 % fetal bovine serum, 1 X NEAA, ⁇ -ME, 1 X pen/strep, and 25 mM HEPES in 175 cm 2 culture flasks.
- the cells were seeded at 30,000/well in 384-well matrigel-coated plates and cultured for 2 hrs at 37 °C before culturing at 27 °C for 24 hrs for the potentiator assay.
- the cells are cultured at 27 0 C or 37 °C with and without compounds for 16 - 24 hoursR Electrophysiological Assays for assaying ⁇ F508-CFTR modulation properties of compounds
- the FRT epithelia demonstrated resistances of 4 K ⁇ / cm 2 or more.
- the solutions were maintained at 27 0 C and bubbled with air.
- the electrode offset potential and fluid resistance were corrected using a cell-free insert.
- the current reflects the flow of Cl " through ⁇ F508-CFTR expressed in the apical membrane.
- the Isc was digitally acquired using an MPlOOA-CE interface and AcqKnowledge software (v3.2.6; BIOPAC Systems, Santa Barbara, CA).
- Typical protocol utilized a basolateral to apical membrane Cl " concentration gradient. To set up this gradient, normal ringer was used on the basolateral membrane, whereas apical NaCl was replaced by equimolar sodium gluconate (titrated to pH 7.4 with NaOH) to give a large Cl " concentration gradient across the epithelium. All experiments were performed with intact monolayers. To fully activate ⁇ F508-CFTR, forskolin (10 ⁇ M) and the PDE inhibitor, IBMX (100 ⁇ M), were applied followed by the addition of the CFTR potentiator, genistein (50 ⁇ M).
- FRT cells stably expressing ⁇ F508-CFTR increases the functional density of CFTR in the plasma membrane.
- the cells were incubated with 10 ⁇ M of the test compound for 24 hours at 37°C and were subsequently washed 3X prior to recording.
- the cAMP- and genistein-mediated Isc in compound- treated cells was normalized to the 27°C and 37°C controls and expressed as percentage activity. Preincubation of the cells with the correction compound significantly increased the cAMP- and genistein-mediated Isc compared to the 37°C controls.
- Typical protocol utilized a basolateral to apical membrane Cl " concentration gradient.
- normal ringers was used on the basolateral membrane and was permeabilized with nystatin (360 jug/ml), whereas apical NaCl was replaced by equimolar sodium gluconate (titrated to pH 7.4 with NaOH) to give a large Cl " concentration gradient across the epithelium. All experiments were performed 30 min after nystatin permeabilization. Forskolin (10 ⁇ M) and all test compounds were added to both sides of the cell culture inserts. The efficacy of the putative ⁇ F508-CFTR potentiators was compared to that of the known potentiator, genistein. 4. Solutions
- Basolateral solution in mM: NaCl (135), CaCl 2 (1.2), MgCl 2 (1.2), K 2 HPO 4 (2.4),
- CFrR CFrR CFrR ) were used for Ussing chamber experiments for the putative ⁇ F508-CFTR modulators identified from our optical assays.
- the cells were cultured on Costar Snapwell cell culture inserts and cultured for five days at 37 °C and 5% CO 2 in Coon's modified Ham's F-12 medium supplemented with 5% fetal calf serum, 100 U/ml penicillin, and 100 ⁇ g/ml streptomycin. Prior to use for characterizing the potentiator activity of compounds, the cells were incubated at 27 °C for 16 - 48 hrs to correct for the ⁇ F508-CFTR. To determine the activity of corrections compounds, the cells were incubated at 27 °C or 37 °C with and without the compounds for 24 hours.
- I ⁇ FSOS The macroscopic ⁇ F508-CFTR current (I ⁇ FSOS ) in temperature- and test compound-corrected NTH3T3 cells stably expressing ⁇ F508-CFTR were monitored using the perforated-patch, whole-cell recording.
- voltage-clamp recordings of I ⁇ F508 were performed at room temperature using an Axopatch 200B patch-clamp amplifier (Axon Instruments Inc., Foster City, CA). All recordings were acquired at a sampling frequency of 10 kHz and low-pass filtered at 1 kHz. Pipettes had a resistance of 5 - 6 M ⁇ when filled with the intracellular solution.
- the cells were incubated with 10 ⁇ M of the test compound for 24 hours at 37°C and the current density was compared to the 27°C and 37°C controls (% activity). Prior to recording, the cells were washed 3X with extracellular recording medium to remove any remaining test compound. Preincubation with 10 ⁇ M of correction compounds significantly increased the cAMP- and genistein-dependent current compared to the 37°C controls.
- Intracellular solution in mM: Cs-aspartate (90), CsCl (50), MgCl 2 (1), HEPES
- NIH3T3 mouse fibroblasts stably expressing ⁇ F508-CFTR are used for whole-cell recordings.
- the cells are maintained at 37 0 C in 5% CO 2 and 90 % humidity in Dulbecco's modified Eagle's medium supplemented with 2 mM glutamine, 10 % fetal bovine serum, 1 X NEAA, ⁇ -ME, 1 X pen/strep, and 25 mM HEPES in 175 cm 2 culture flasks.
- 2,500 - 5,000 cells were seeded on poly-L- lysine-coated glass coverslips and cultured for 24 - 48 hrs at 27 °C before use to test the activity of potentiators; and incubated with or without the correction compound at 37 0 C for measuring the activity of correctors.
- the ⁇ F508-CFTR was activated after excision, by adding 1 mM Mg-ATP, and 75 nM of the cAMP-dependent protein kinase, catalytic subunit (PKA; Promega Corp. Madison, WI). After channel activity stabilized, the patch was perifused using a gravity-driven microperfusion system. The inflow was placed adjacent to the patch, resulting in complete solution exchange within 1 - 2 sec. To maintain ⁇ F508-CFTR activity during the rapid perifusion, the nonspecific phosphatase inhibitor F " (10 mM NaF) was added to the bath solution. Under these recording conditions, channel activity remained constant throughout the duration of the patch recording (up to 60 min). Currents produced by positive charge moving from the intra- to extracellular solutions (anions moving in the opposite direction) are shown as positive currents. The pipette potential (V p ) was maintained at 80 mV.
- V p The pipette potential
- Extracellular solution in mM: NMDG (150), aspartic acid (150), CaCl 2 (5), MgCl 2
- Intracellular solution in mM: NMDG-Cl (150), MgCl 2 (2), EGTA (5), TES (10), and Tris base (14) (pH adjusted to 7.35 with HCl).
- NIH3T3 mouse fibroblasts stably expressing AF508-CFTR are used for excised-membrane patch-clamp recordings.
- the cells are maintained at 37 0 C in 5% CO 2 and 90 % humidity in Dulbecco's modified Eagle's medium supplemented with 2 mM glutamine, 10 % fetal bovine serum, 1 X NEAA, ⁇ -ME, 1 X pen/strep, and 25 mM HEPES in 175 cm 2 culture flasks.
- 2,500 - 5,000 cells were seeded on poly-L-lysine-coated glass coverslips and cultured for 24 - 48 hrs at 27 0 C before use.
- Table 3 contains the assay results for the compounds in Table 1.
- the potency ranges in Table 3 were determined are as follows: +++ corresponds to EC50 potencies less than 1.0 ⁇ M, ++ corresponds to EC50 potencies between 1.0 ⁇ M and 5.0 ⁇ M, and + corresponds to EC50 potencies greater than 5.0 ⁇ M.
- the efficacy ranges in Table 3 were determined as follows: +++ corresponds to Efficacy greater than 100, ++ corresponds to Efficacy between 100 and 50, and + corresponds to Efficacy less than 50.
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JP2008513583A JP5426878B2 (en) | 2005-05-24 | 2006-05-22 | ATP-binding cassette transporter modulator |
AU2006251624A AU2006251624A1 (en) | 2005-05-24 | 2006-05-22 | Modulators of ATP-Binding cassette transporters |
AT06770825T ATE533749T1 (en) | 2005-05-24 | 2006-05-22 | MODULATORS OF ATP-BINDING CASSETTE TRANSPORTERS |
CA002609392A CA2609392A1 (en) | 2005-05-24 | 2006-05-22 | Modulators of atp-binding cassette transporters |
EP06770825A EP1891018B1 (en) | 2005-05-24 | 2006-05-22 | Modulators of atp-binding cassette transporters |
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Also Published As
Publication number | Publication date |
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EP1891018A2 (en) | 2008-02-27 |
WO2006127588A3 (en) | 2007-07-26 |
CN101223146A (en) | 2008-07-16 |
CA2609392A1 (en) | 2006-11-30 |
AU2006251624A1 (en) | 2006-11-30 |
JP2008542279A (en) | 2008-11-27 |
US20070105833A1 (en) | 2007-05-10 |
JP2013010800A (en) | 2013-01-17 |
US8822451B2 (en) | 2014-09-02 |
ATE533749T1 (en) | 2011-12-15 |
JP5426878B2 (en) | 2014-02-26 |
EP1891018B1 (en) | 2011-11-16 |
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