data_2WBS # _model_server_result.job_id uXT2VKyz6e0O7eGiLdunqA _model_server_result.datetime_utc '2024-12-01 04:02:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2wbs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1487}' # _entry.id 2WBS # _exptl.entry_id 2WBS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2WBS _cell.length_a 41 _cell.length_b 45.97 _cell.length_c 73.91 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2WBS _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 8 A CYS 402 1_555 F ZN ZN . A ZN 1486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc2 A SG CYS 13 A CYS 407 1_555 F ZN ZN . A ZN 1486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc3 A NE2 HIS 26 A HIS 420 1_555 F ZN ZN . A ZN 1486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc4 A NE2 HIS 30 A HIS 424 1_555 F ZN ZN . A ZN 1486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.932 ? metalc ? metalc5 A SG CYS 38 A CYS 432 1_555 D ZN ZN . A ZN 1484 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc6 A SG CYS 43 A CYS 437 1_555 D ZN ZN . A ZN 1484 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc7 A NE2 HIS 56 A HIS 450 1_555 D ZN ZN . A ZN 1484 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc8 A NE2 HIS 60 A HIS 454 1_555 D ZN ZN . A ZN 1484 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? metalc ? metalc9 A SG CYS 68 A CYS 462 1_555 E ZN ZN . A ZN 1485 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc10 A SG CYS 71 A CYS 465 1_555 E ZN ZN . A ZN 1485 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc11 A NE2 HIS 84 A HIS 478 1_555 E ZN ZN . A ZN 1485 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc12 A NE2 HIS 88 A HIS 482 1_555 E ZN ZN . A ZN 1485 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? hydrog WATSON-CRICK hydrog1 B N1 DG 1 F DG 1 1_555 C N3 DC 7 G DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N2 DG 1 F DG 1 1_555 C O2 DC 7 G DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O6 DG 1 F DG 1 1_555 C N4 DC 7 G DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N1 DA 2 F DA 2 1_555 C N3 DT 6 G DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N6 DA 2 F DA 2 1_555 C O4 DT 6 G DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N1 DG 3 F DG 3 1_555 C N3 DC 5 G DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N2 DG 3 F DG 3 1_555 C O2 DC 5 G DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B O6 DG 3 F DG 3 1_555 C N4 DC 5 G DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N1 DG 4 F DG 4 1_555 C N3 DC 4 G DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N2 DG 4 F DG 4 1_555 C O2 DC 4 G DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B O6 DG 4 F DG 4 1_555 C N4 DC 4 G DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N3 DC 5 F DC 5 1_555 C N1 DG 3 G DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N4 DC 5 F DC 5 1_555 C O6 DG 3 G DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B O2 DC 5 F DC 5 1_555 C N2 DG 3 G DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N1 DG 6 F DG 6 1_555 C N3 DC 2 G DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B N2 DG 6 F DG 6 1_555 C O2 DC 2 G DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B O6 DG 6 F DG 6 1_555 C N4 DC 2 G DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B N3 DC 7 F DC 7 1_555 C N1 DG 1 G DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B N4 DC 7 F DC 7 1_555 C O6 DG 1 G DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B O2 DC 7 F DC 7 1_555 C N2 DG 1 G DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 262 n n C1 C2 GOL sing 263 n n C1 H11 GOL sing 264 n n C1 H12 GOL sing 265 n n O1 HO1 GOL sing 266 n n C2 O2 GOL sing 267 n n C2 C3 GOL sing 268 n n C2 H2 GOL sing 269 n n O2 HO2 GOL sing 270 n n C3 O3 GOL sing 271 n n C3 H31 GOL sing 272 n n C3 H32 GOL sing 273 n n O3 HO3 GOL sing 274 n n # _atom_sites.entry_id 2WBS _atom_sites.fract_transf_matrix[1][1] 0.02439 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021753 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01353 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN A 1 1484 1484 ZN ZN . E 4 ZN A 1 1485 1485 ZN ZN . F 4 ZN A 1 1486 1486 ZN ZN . G 5 GOL A 1 1487 1487 GOL GOL . H 6 HOH A 1 2001 2001 HOH HOH . H 6 HOH A 2 2002 2002 HOH HOH . H 6 HOH A 3 2003 2003 HOH HOH . H 6 HOH A 4 2004 2004 HOH HOH . H 6 HOH A 5 2005 2005 HOH HOH . H 6 HOH A 6 2006 2006 HOH HOH . H 6 HOH A 7 2007 2007 HOH HOH . H 6 HOH A 8 2008 2008 HOH HOH . H 6 HOH A 9 2009 2009 HOH HOH . H 6 HOH A 10 2010 2010 HOH HOH . H 6 HOH A 11 2011 2011 HOH HOH . H 6 HOH A 12 2012 2012 HOH HOH . H 6 HOH A 13 2013 2013 HOH HOH . H 6 HOH A 14 2014 2014 HOH HOH . H 6 HOH A 15 2015 2015 HOH HOH . H 6 HOH A 16 2016 2016 HOH HOH . H 6 HOH A 17 2017 2017 HOH HOH . H 6 HOH A 18 2018 2018 HOH HOH . H 6 HOH A 19 2019 2019 HOH HOH . H 6 HOH A 20 2020 2020 HOH HOH . H 6 HOH A 21 2021 2021 HOH HOH . H 6 HOH A 22 2022 2022 HOH HOH . H 6 HOH A 23 2023 2023 HOH HOH . H 6 HOH A 24 2024 2024 HOH HOH . H 6 HOH A 25 2025 2025 HOH HOH . H 6 HOH A 26 2026 2026 HOH HOH . H 6 HOH A 27 2027 2027 HOH HOH . H 6 HOH A 28 2028 2028 HOH HOH . H 6 HOH A 29 2029 2029 HOH HOH . H 6 HOH A 30 2030 2030 HOH HOH . H 6 HOH A 31 2031 2031 HOH HOH . H 6 HOH A 32 2032 2032 HOH HOH . H 6 HOH A 33 2033 2033 HOH HOH . H 6 HOH A 34 2034 2034 HOH HOH . H 6 HOH A 35 2035 2035 HOH HOH . H 6 HOH A 36 2036 2036 HOH HOH . H 6 HOH A 37 2037 2037 HOH HOH . H 6 HOH A 38 2038 2038 HOH HOH . H 6 HOH A 39 2039 2039 HOH HOH . H 6 HOH A 40 2040 2040 HOH HOH . H 6 HOH A 41 2041 2041 HOH HOH . H 6 HOH A 42 2042 2042 HOH HOH . H 6 HOH A 43 2043 2043 HOH HOH . H 6 HOH A 44 2044 2044 HOH HOH . H 6 HOH A 45 2045 2045 HOH HOH . H 6 HOH A 46 2046 2046 HOH HOH . H 6 HOH A 47 2047 2047 HOH HOH . H 6 HOH A 48 2048 2048 HOH HOH . H 6 HOH A 49 2049 2049 HOH HOH . H 6 HOH A 50 2050 2050 HOH HOH . H 6 HOH A 51 2051 2051 HOH HOH . H 6 HOH A 52 2052 2052 HOH HOH . H 6 HOH A 53 2053 2053 HOH HOH . H 6 HOH A 54 2054 2054 HOH HOH . H 6 HOH A 55 2055 2055 HOH HOH . H 6 HOH A 56 2056 2056 HOH HOH . H 6 HOH A 57 2057 2057 HOH HOH . H 6 HOH A 58 2058 2058 HOH HOH . H 6 HOH A 59 2059 2059 HOH HOH . H 6 HOH A 60 2060 2060 HOH HOH . H 6 HOH A 61 2061 2061 HOH HOH . H 6 HOH A 62 2062 2062 HOH HOH . H 6 HOH A 63 2063 2063 HOH HOH . H 6 HOH A 64 2064 2064 HOH HOH . H 6 HOH A 65 2065 2065 HOH HOH . H 6 HOH A 66 2066 2066 HOH HOH . H 6 HOH A 67 2067 2067 HOH HOH . H 6 HOH A 68 2068 2068 HOH HOH . H 6 HOH A 69 2069 2069 HOH HOH . H 6 HOH A 70 2070 2070 HOH HOH . H 6 HOH A 71 2071 2071 HOH HOH . H 6 HOH A 72 2072 2072 HOH HOH . H 6 HOH A 73 2073 2073 HOH HOH . H 6 HOH A 74 2074 2074 HOH HOH . H 6 HOH A 75 2075 2075 HOH HOH . H 6 HOH A 76 2076 2076 HOH HOH . H 6 HOH A 77 2077 2077 HOH HOH . H 6 HOH A 78 2078 2078 HOH HOH . H 6 HOH A 79 2079 2079 HOH HOH . I 6 HOH F 1 2001 2001 HOH HOH . I 6 HOH F 2 2002 2002 HOH HOH . I 6 HOH F 3 2003 2003 HOH HOH . I 6 HOH F 4 2004 2004 HOH HOH . I 6 HOH F 5 2005 2005 HOH HOH . I 6 HOH F 6 2006 2006 HOH HOH . I 6 HOH F 7 2007 2007 HOH HOH . I 6 HOH F 8 2008 2008 HOH HOH . I 6 HOH F 9 2009 2009 HOH HOH . I 6 HOH F 10 2010 2010 HOH HOH . I 6 HOH F 11 2011 2011 HOH HOH . I 6 HOH F 12 2012 2012 HOH HOH . I 6 HOH F 13 2013 2013 HOH HOH . I 6 HOH F 14 2014 2014 HOH HOH . I 6 HOH F 15 2015 2015 HOH HOH . I 6 HOH F 16 2016 2016 HOH HOH . I 6 HOH F 17 2017 2017 HOH HOH . I 6 HOH F 18 2018 2018 HOH HOH . I 6 HOH F 19 2019 2019 HOH HOH . I 6 HOH F 20 2020 2020 HOH HOH . I 6 HOH F 21 2021 2021 HOH HOH . I 6 HOH F 22 2022 2022 HOH HOH . I 6 HOH F 23 2023 2023 HOH HOH . I 6 HOH F 24 2024 2024 HOH HOH . I 6 HOH F 25 2025 2025 HOH HOH . I 6 HOH F 26 2026 2026 HOH HOH . J 6 HOH G 1 2001 2001 HOH HOH . J 6 HOH G 2 2002 2002 HOH HOH . J 6 HOH G 3 2003 2003 HOH HOH . J 6 HOH G 4 2004 2004 HOH HOH . J 6 HOH G 5 2005 2005 HOH HOH . J 6 HOH G 6 2006 2006 HOH HOH . J 6 HOH G 7 2007 2007 HOH HOH . J 6 HOH G 8 2008 2008 HOH HOH . J 6 HOH G 9 2009 2009 HOH HOH . J 6 HOH G 10 2010 2010 HOH HOH . J 6 HOH G 11 2011 2011 HOH HOH . J 6 HOH G 12 2012 2012 HOH HOH . J 6 HOH G 13 2013 2013 HOH HOH . J 6 HOH G 14 2014 2014 HOH HOH . J 6 HOH G 15 2015 2015 HOH HOH . J 6 HOH G 16 2016 2016 HOH HOH . J 6 HOH G 17 2017 2017 HOH HOH . J 6 HOH G 18 2018 2018 HOH HOH . J 6 HOH G 19 2019 2019 HOH HOH . J 6 HOH G 20 2020 2020 HOH HOH . J 6 HOH G 21 2021 2021 HOH HOH . J 6 HOH G 22 2022 2022 HOH HOH . J 6 HOH G 23 2023 2023 HOH HOH . J 6 HOH G 24 2024 2024 HOH HOH . J 6 HOH G 25 2025 2025 HOH HOH . J 6 HOH G 26 2026 2026 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 5 21.701 15.645 1.53 1 47.99 ? C1 GOL 1487 A 1 HETATM 2 O O1 GOL . . . G 5 21.309 14.373 1.051 1 51.51 ? O1 GOL 1487 A 1 HETATM 3 C C2 GOL . . . G 5 20.728 16.113 2.622 1 46 ? C2 GOL 1487 A 1 HETATM 4 O O2 GOL . . . G 5 19.982 15 3.108 1 41.92 ? O2 GOL 1487 A 1 HETATM 5 C C3 GOL . . . G 5 21.545 16.749 3.747 1 38.13 ? C3 GOL 1487 A 1 HETATM 6 O O3 GOL . . . G 5 20.748 17.107 4.862 1 39 ? O3 GOL 1487 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #