Stars
FINCHES (First-principle Interactions via CHEmical Specificity) - Python package for predicting chemically-specific molecular interactions for IDRs
Accurate prediction of protein intrinsic disorder and its functions using graph-based interaction protein language model
A list of alternative splicing analysis resources
Software tool for the flexible design of pegRNAs and ngRNAs for prime editing!
Automatically identify non-interfering nucleotide linkers between a pegRNA and 3' motif
Some Rosetta Scripts that allow for various simple tasks
A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.
ggpie - A ggplot2 extension to create pie, donut and rose pie plot
Build and run containers leveraging NVIDIA GPUs
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
A computational workflow for exitron splicing identification
Prediction of Binding Residues in Disordered Regions Based on Protein Embeddings; TUM Master Praktikum Bioinformatics 2022 (Project #3) and Master's Thesis
ClinVar Mapping and Annotation Toolkit
A machine learning based protein disorder predictor.
Open source code for AlphaFold.
To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released
sam2pairwise takes a SAM file and uses the CIGAR and MD tag to reconstruct the pairwise alignment of each read.
A collection of scripts and notes related to genomics and bioinformatics