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Missing input files for rule COOK_ANNOTATION: #46

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iichelhadi opened this issue Dec 10, 2022 · 1 comment
Open

Missing input files for rule COOK_ANNOTATION: #46

iichelhadi opened this issue Dec 10, 2022 · 1 comment

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@iichelhadi
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Hi guys,
I encounter this error when performing the dry-run. I am not sure how to resolve this issue.

MissingInputException in line 507 of ./celseq2/lib/python3.7/site-packages/celseq2/workflow/celseq2_beta.snakemake:
Missing input files for rule COOK_ANNOTATION:
wonderful_experiment_table.txt

Any help would be greatly appreciated.

@iichelhadi
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I may have resolved the issue by providing the full path to the wonderful_experiment_table.txt file but now have an new error

WildcardError in line 396 of /celseq2/lib/python3.7/site-packages/celseq2/workflow/celseq2_beta.snakemake:
Wildcards in params cannot be determined from output files. Note that you have to use a function to deactivate automatic wildcard expansion in params strings, e.g., `lambda wildcards: '{test}'`. Also see https://snakemake.readthedocs.io/en/stable/snakefiles/rules.html#non-file-parameters-for-rules:
'line'

Any help would be greatly appreciated.

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