You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Greetings,
The following is my mode and the error i am getting while using celseq2 pipeline.
My code:
celseq2 --config-file test.yaml --path-to/test.txt --output-dir result_dir1 -j 10
I got the following error in terminal:
Error in rule COOK_ANNOTATION:
jobid: 0
output: result_dir1/annotation/Homo_sapiens.GRCh38.pickle, result_dir1/annotation/Homo_sapiens.GRCh38.csv, _done_annotation
RuleException:
ContextualVersionConflict in line 520 of /path-to/celseq2/workflow/celseq2_beta.snakemake:
(plotly 2.7.0 (/path-to/.local/lib/python3.8/site-packages), Requirement.parse('plotly>=3'), {'xlmhg'})
File "/path-to/.local/lib/python3.8/site-packages/celseq2/workflow/celseq2_beta.snakemake", line 520, in __rule_COOK_ANNOTATION
File "/path-to/.loca/lib/python3.8/site-packages/genometools/init.py", line 24, in
File "/usr/lib/python3/dist-packages/pkg_resources/init.py", line 901, in require
File "/usr/lib/python3/dist-packages/pkg_resources/init.py", line 792, in resolve
File "/usr/lib/python3.8/concurrent/futures/thread.py", line 57, in run
Exiting because a job execution failed. Look above for error message
[ Thu Mar 3 12:56:57 2022 ] Demultiplexing ends /path-to/SRR4246941_1.fastq.gz--/path-to/SRR4246941_2.fastq.gz.
touch _done_combodemultiplex
Dynamically updating jobs
[Thu Mar 3 12:56:57 2022]
Finished job 13.
1 of 13 steps (8%) done
Shutting down, this might take some time.
Exiting because a job execution failed. Look above for error message
Complete log: path-to/testcodes/umo/.snakemake/log/2022-03-03T125639.227066.snakemake.log
Thanks in advance
The text was updated successfully, but these errors were encountered:
Greetings,
The following is my mode and the error i am getting while using celseq2 pipeline.
My code:
celseq2 --config-file test.yaml --path-to/test.txt --output-dir result_dir1 -j 10
I got the following error in terminal:
Error in rule COOK_ANNOTATION:
jobid: 0
output: result_dir1/annotation/Homo_sapiens.GRCh38.pickle, result_dir1/annotation/Homo_sapiens.GRCh38.csv, _done_annotation
RuleException:
ContextualVersionConflict in line 520 of /path-to/celseq2/workflow/celseq2_beta.snakemake:
(plotly 2.7.0 (/path-to/.local/lib/python3.8/site-packages), Requirement.parse('plotly>=3'), {'xlmhg'})
File "/path-to/.local/lib/python3.8/site-packages/celseq2/workflow/celseq2_beta.snakemake", line 520, in __rule_COOK_ANNOTATION
File "/path-to/.loca/lib/python3.8/site-packages/genometools/init.py", line 24, in
File "/usr/lib/python3/dist-packages/pkg_resources/init.py", line 901, in require
File "/usr/lib/python3/dist-packages/pkg_resources/init.py", line 792, in resolve
File "/usr/lib/python3.8/concurrent/futures/thread.py", line 57, in run
Exiting because a job execution failed. Look above for error message
[ Thu Mar 3 12:56:57 2022 ] Demultiplexing ends /path-to/SRR4246941_1.fastq.gz--/path-to/SRR4246941_2.fastq.gz.
touch _done_combodemultiplex
Dynamically updating jobs
[Thu Mar 3 12:56:57 2022]
Finished job 13.
1 of 13 steps (8%) done
Shutting down, this might take some time.
Exiting because a job execution failed. Look above for error message
Complete log: path-to/testcodes/umo/.snakemake/log/2022-03-03T125639.227066.snakemake.log
Thanks in advance
The text was updated successfully, but these errors were encountered: