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DESCRIPTION
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DESCRIPTION
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Package: SINCERA
Type: Package
Title: An R implementation of SINCERA pipeline for processing
single-cell RNA-seq data.
Version: 0.99.0
Date: 2018-08-22
Authors@R: person("Minzhe", "Guo", email = "[email protected]", role = c("aut", "cre"))
Depends: R (>= 3.2.0), Biobase, ROCR, RobustRankAggreg, Rtsne, tsne, RColorBrewer, gridExtra, dplyr,
G1DBN, igraph, ggplot2, ggdendro, plyr, zoo, reshape2, gmodels, cluster, pheatmap, dendextend
Maintainer: Minzhe Guo <[email protected]>
URL: https://github.com/minzheguo/SINCERA
BugReports: https://github.com/minzheguo/SINCERA/issues
Description: The pipeline
supports the analysis for: the distinction and identification
of major cell types; the identification of cell type specific
gene signatures; and the determination of driving forces of
given cell types.
License: GPL-3
LazyData: TRUE
Imports: e1071
RoxygenNote: 6.0.1
Collate:
'sincera.R'
'celltype.R'
'drivingforce.R'
'plotting.R'
'preprocessing.R'
'signature.R'