Commits

Commits on Jun 12, 2023

Merge pull request #44 from Npaffen/master - closes #43
yannickwurm
committedJun 12, 2023

Commits on Jun 7, 2023

Update install.sh
Npaffen
committedJun 7, 2023

Commits on May 29, 2021

Outdent list of citations
yeban
committedMay 29, 2021
Add new citations; switch to numbered list
yeban
committedMay 29, 2021
Merge remote-tracking branch 'cmatKhan/master'
yeban
committedMay 29, 2021
add shebang to scripts/install.sh
cmatKhan
committedMay 29, 2021

Commits on Dec 30, 2020

Add one more citation; use title case for citations
yeban
committedDec 30, 2020

Commits on Dec 3, 2020

Add new citations of flo to README
yeban
committedDec 3, 2020

Commits on Nov 23, 2020

Add CITATION.cff
yeban
committedNov 23, 2020

Commits on Nov 16, 2020

Better explain unmapped.txt output file in README
yeban
committedNov 16, 2020
Print helpful message instead of stacktrace if cleaning lifted gff fails
yeban
committedNov 16, 2020
Ask to install BioRuby on stderr
yeban
committedNov 16, 2020

Commits on Nov 11, 2020

gff_recover.rb should exit if bioruby is not installed!
yeban
committedNov 11, 2020

Commits on Aug 20, 2019

Add 3 new mentions of flo
yeban
committedAug 20, 2019
Ask to cite MolEcol paper and fix a typo
yeban
committedAug 20, 2019

Commits on Oct 10, 2018

Add a subset of augustus 3.3 output for testing gff_remove_feats.rb
yeban
committedOct 10, 2018

Commits on Sep 30, 2018

Revise gff feature removal script
yeban
committedSep 30, 2018

Commits on Jul 22, 2018

Fix install script
yeban
committedJul 22, 2018

Commits on Jul 14, 2018

Expand paths before adding to path
yeban
committedJul 14, 2018
Expand path to source and target fa
yeban
committedJul 14, 2018

Commits on Jun 25, 2018

colons
yeban
committedJun 25, 2018
Reverse chronological order for citations (year only)
yeban
committedJun 25, 2018
Update citations
yeban
committedJun 25, 2018
Check Linux or Mac for downloading UCSC tools
yeban
committedJun 25, 2018
Expand README
yeban
committedJun 25, 2018
Highlight name of generated chain file in README
yeban
committedJun 25, 2018
Alternatively, the input file may not be in GFF3 format
yeban
committedJun 25, 2018
Print help if liftOver's output is empty and exit
yeban
committedJun 25, 2018
Add script to get longest transcript per gene from a GFF file
yeban
committedJun 25, 2018
gff_remove_feats.rb: Print help unless both params specified
yeban
committedJun 25, 2018

Commits on Apr 25, 2018

max threads = num scaffolds in target
yannickwurm
committedApr 25, 2018

Commits on Oct 29, 2017

gff_compare.rb: sort before extractfeat
yeban
committedOct 29, 2017

Commits on Oct 17, 2017

Use basename of input gff for creating output dir
yeban
committedOct 17, 2017

Commits on Jul 14, 2017

Suggest lowering minIdentity for inter-species liftover.
yeban
committedJul 14, 2017
Fix invocation of gff_compare.rb.
yeban
committedJul 14, 2017