Snakemake pipeline to analyze transposable element 'omics data.

Another Gtf/Gff Analysis Toolkit

Nextflow pipeline for performing parallel alternative splicing analysis using rMATS and Whippet and then overlapping the results.

Transcript assembly and quantification for RNA-Seq

Biological foundation modeling from molecular to genome scale

⏩ Continue is the leading open-source AI code assistant. You can connect any models and any context to build custom autocomplete and chat experiences inside VS Code and JetBrains

Easily manage the brightness of your monitors in Windows from the system tray

A 'ggplot2' implement of Venn Diagram.

Defense Against the Dark Arts

Friends don't let friends make certain types of data visualization - What are they and why are they bad.

Longitudinal Transcriptomic TimeSeriesAnalysis is a transcriptomic analysis tool for both RNA sequencing and microarray data

FunctionaL Omics Processing platform

Package management made easy

Advanced Python Mastery (course by @dabeaz)

Generation of diagrams like flowcharts or sequence diagrams from text in a similar manner as markdown

Lightweight lockfile for conda environments

Simple http server in Rust (Windows/Mac/Linux)

simple terminal UI for git commands

The lazier way to manage everything docker

Tabular seff

Typer, build great CLIs. Easy to code. Based on Python type hints.

A command line tool that draw plots on the terminal.

Multiplatform plotting library based on the Grammar of Graphics

Inspect a command's effects before modifying your live system

🤖 Just a command runner

Ping, but with a graph

Rich is a Python library for rich text and beautiful formatting in the terminal.

Params validation plugin for Nextflow pipelines

Human reference genome analysis sets