This repo includes ChatGPT prompt curation to use ChatGPT better.

Collections of library structure and sequence of popular single cell genomic methods

A tool to map bisulfite converted sequence reads and determine cytosine methylation states

Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial transcriptomics

Chat with your data via AI. https://RTutor.ai

Ten Quick Tips for Deep Learning in Biology

Tool for the Quality Control of Long-Read Defined Transcriptomes

A simple RNA-Seq differential gene expression pipeline using Nextflow

R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the malignant cells. It also infers the copy number profile of m…

Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"

Awesome list of tools and methods to perform spatial transcriptomic data analysis.

An R package to plot interactive three-way differential expression analysis