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README.md: fixes URLs for the Ford doc
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vmagnin committed Mar 6, 2024
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Expand Up @@ -30,7 +30,7 @@ call setpixelrgb(x, y, red, green, blue)

The library is using the precision `wp=>real64` defined in the module `iso_fortran_env`. And depending on the integers expected by your graphical library, you may need to convert the kinds of red, green, blue variables by writing for example `int(red, kind=int16)` if you need 16 bit integers.

This [guideline](https://s-ink.org/colour-map-guideline) can help you choose the right kind of colormap. And you can visually choose the available colormaps in the [colormaps_list/ForColormap.pdf](https://github.com/vmagnin/forcolormap/blob/main/colormaps_list/ForColormap.pdf) manual or on this page (under development): [https://github.com/gha3mi/forcolormap/tree/dev]()
This [guideline](https://s-ink.org/colour-map-guideline) can help you choose the right kind of colormap. And you can visually choose the available colormaps in the [colormaps_list/ForColormap.pdf](https://github.com/vmagnin/forcolormap/blob/main/colormaps_list/ForColormap.pdf) manual or on this page (under development): [https://github.com/gha3mi/forcolormap/tree/dev](https://github.com/gha3mi/forcolormap/tree/dev)


## Installation
Expand Down Expand Up @@ -143,7 +143,7 @@ They can be launched with the command `fpm run --example name_of_the_example` (w

In the gtk-fortran-extra repository, you will also find a [physical model](https://github.com/vmagnin/gtk-fortran-extra/tree/main/reaction_diffusion) demonstrating the use of ForColormap. It creates a movie with Turing patterns, displayed with various colormaps:

[https://www.youtube.com/watch?v=cVHLCVVvZ4U]()
[https://www.youtube.com/watch?v=cVHLCVVvZ4U](https://www.youtube.com/watch?v=cVHLCVVvZ4U)

## Licenses

Expand All @@ -155,42 +155,42 @@ This project is under MIT license. The logo files are under [license CC BY-SA 4.
As any work, a colormap should be cited:

* For *Scientific colour maps,* please cite these two items:
* Crameri, F. (2018a), Scientific colour maps. *Zenodo.* [https://doi.org/10.5281/zenodo.1243862]()
* Crameri, Fabio, Grace E. Shephard, and Philip J. Heron. “The Misuse of Colour in Science Communication.” *Nature Communications* 11, no. 1 (October 28, 2020): 5444. [https://doi.org/10.1038/s41467-020-19160-7]().
* For the matplotlib colormaps, you can cite this webpage [https://bids.github.io/colormap/]()
* Crameri, F. (2018a), Scientific colour maps. *Zenodo.* [https://doi.org/10.5281/zenodo.1243862](https://doi.org/10.5281/zenodo.1243862)
* Crameri, Fabio, Grace E. Shephard, and Philip J. Heron. “The Misuse of Colour in Science Communication.” *Nature Communications* 11, no. 1 (October 28, 2020): 5444. [https://doi.org/10.1038/s41467-020-19160-7](https://doi.org/10.1038/s41467-020-19160-7).
* For the matplotlib colormaps, you can cite this webpage [https://bids.github.io/colormap/](https://bids.github.io/colormap/)
* For the *cubehelix* colormap, please cite:
* Green, D. A. “A Colour Scheme for the Display of Astronomical Intensity Images.” *arXiv,* August 30, 2011. [https://arxiv.org/abs/1108.5083]().
* Green, D. A. “A Colour Scheme for the Display of Astronomical Intensity Images.” *arXiv,* August 30, 2011. [https://arxiv.org/abs/1108.5083](https://arxiv.org/abs/1108.5083).


## References

### Articles and books

* Nuñez, Jamie R., Christopher R. Anderton, and Ryan S. Renslow. “Optimizing Colormaps with Consideration for Color Vision Deficiency to Enable Accurate Interpretation of Scientific Data.” Edited by Jesús Malo. *PLOS ONE* 13, no. 7, August 1, 2018, e0199239. [https://doi.org/10.1371/journal.pone.0199239]().
* Nuñez, Jamie R., Christopher R. Anderton, and Ryan S. Renslow. “Optimizing Colormaps with Consideration for Color Vision Deficiency to Enable Accurate Interpretation of Scientific Data.” Edited by Jesús Malo. *PLOS ONE* 13, no. 7, August 1, 2018, e0199239. [https://doi.org/10.1371/journal.pone.0199239](https://doi.org/10.1371/journal.pone.0199239).
* Rogowitz, Bernice E, and Lloyd A Treinish. [“Why Should Engineers and Scientists Be Worried About Color?”](https://github.com/amadeusine/interesting-reads/blob/master/ibm-research__why-should-engineers-and-scientists-be-worried-about-color.pdf)
* Thyng, Kristen, Chad Greene, Robert Hetland, Heather Zimmerle, and Steven DiMarco. “True Colors of Oceanography: Guidelines for Effective and Accurate Colormap Selection.” *Oceanography* 29, no. 3, September 1, 2016, pp. 9–13. [https://doi.org/10.5670/oceanog.2016.66]().
* Thyng, Kristen, Chad Greene, Robert Hetland, Heather Zimmerle, and Steven DiMarco. “True Colors of Oceanography: Guidelines for Effective and Accurate Colormap Selection.” *Oceanography* 29, no. 3, September 1, 2016, pp. 9–13. [https://doi.org/10.5670/oceanog.2016.66](https://doi.org/10.5670/oceanog.2016.66).
* Valeur, Bernard. *La couleur dans tous ses éclats.* Bibliothèque scientifique. Paris: Belin-"Pour la science", 2011, ISBN 9782701158761.
* Valeur, Bernard. *Lumière et luminescence - Ces phénomènes lumineux qui nous entourent.* Bibliothèque scientifique. Paris: Belin-"Pour la science", 2005, ISBN 9782701136035.

### Web pages

#### About colormaps
* https://en.wikipedia.org/wiki/Color_gradient
* https://en.wikipedia.org/wiki/Heat_map
* [https://en.wikipedia.org/wiki/Color_gradient](https://en.wikipedia.org/wiki/Color_gradient)
* [https://en.wikipedia.org/wiki/Heat_map](https://en.wikipedia.org/wiki/Heat_map)
* Ken Hughes, ["Default colormaps: Are Parula and Viridis really an improvement over Jet?"](https://brushingupscience.com/2019/10/01/default-colormaps-are-parula-and-viridis-really-an-improvement-over-jet/), posted on October 1, 2019.
* [In Search of a Perfect Colormap](https://inversed.ru/Blog_2.htm)
* The [Data Visualisation Guide section about colours](https://data.europa.eu/apps/data-visualisation-guide/tag/colour)

#### Specific colormaps
* Cubehelix (Dave Green, public domain): [https://people.phy.cam.ac.uk/dag9/CUBEHELIX/]()
* Cubehelix (Dave Green, public domain): [https://people.phy.cam.ac.uk/dag9/CUBEHELIX/](https://people.phy.cam.ac.uk/dag9/CUBEHELIX/)
* Scientific colour maps (Fabio Crameri, MIT license):
* [https://www.fabiocrameri.ch/colourmaps/]()
* [https://s-ink.org/colour-map-guideline]()
* [https://s-ink.org/scientific-colour-maps]()
* Seminar talk by Fabio Crameri about the scientific use of colour in science communication for the University of Oslo GeoHyd seminar: [https://www.youtube.com/watch?v=iDPzWARbFrs]()
* [https://www.fabiocrameri.ch/colourmaps/](https://www.fabiocrameri.ch/colourmaps/)
* [https://s-ink.org/colour-map-guideline](https://s-ink.org/colour-map-guideline)
* [https://s-ink.org/scientific-colour-maps](https://s-ink.org/scientific-colour-maps)
* Seminar talk by Fabio Crameri about the scientific use of colour in science communication for the University of Oslo GeoHyd seminar: [https://www.youtube.com/watch?v=iDPzWARbFrs](https://www.youtube.com/watch?v=iDPzWARbFrs)
* Matplotlib colormaps (CC0 license / public domain):
* Stéfan van der Walt and Nathaniel Smith: [https://bids.github.io/colormap/]()
* Python version: [https://github.com/BIDS/colormap/blob/master/colormaps.py]()
* Nathaniel Smith and Stéfan van der Walt, *A Better Default Colormap for Matplotlib,* SciPy 2015: [https://www.youtube.com/watch?v=xAoljeRJ3lU]()
* Stéfan van der Walt and Nathaniel Smith: [https://bids.github.io/colormap/](https://bids.github.io/colormap/)
* Python version: [https://github.com/BIDS/colormap/blob/master/colormaps.py](https://github.com/BIDS/colormap/blob/master/colormaps.py)
* Nathaniel Smith and Stéfan van der Walt, *A Better Default Colormap for Matplotlib,* SciPy 2015: [https://www.youtube.com/watch?v=xAoljeRJ3lU](https://www.youtube.com/watch?v=xAoljeRJ3lU)
* Black Body colormap (CC0 license / public domain) by Kenneth Moreland: ["Color Map Advice for Scientific Visualization"](https://www.kennethmoreland.com/color-advice/).
* [Colors for data scientists. Generate and refine palettes of optimally distinct colors.](https://medialab.github.io/iwanthue/)

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