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Convert seurat object to JSON files #84

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ZhengTiger opened this issue Apr 15, 2024 · 1 comment
Open

Convert seurat object to JSON files #84

ZhengTiger opened this issue Apr 15, 2024 · 1 comment

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@ZhengTiger
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I looked at this documentation, but I don't know if there's any easy way to convert my seurat objects into these json files?

"linnarsson.cells.json"
"linnarsson.cell-sets.json"
"linnarsson.molecules.json"
"linnarsson.clusters.json"
"linnarsson.raster.json"
@Artur-man
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Artur-man commented Jul 26, 2024

You could also convert your Seurat object into an Anndata object and save it as zarr, then use an AnnDataWrapper like it is shown here. But if you need access remotely then I don't know if remote zarr are supported by AnnDataWrapper or not.

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