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Add low level methods for handle graphs #129
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enhancement
New feature or request
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A couple more that may be worth adding:
|
rlorigro
changed the title
Add low level methods for paths
Add low level methods for handle graphs
Oct 18, 2021
Another method that might be nice:
At the moment, the only way to iterate every base in a sequence (for kmer counting, for example) is to copy the whole sequence, or to use get_base() which may have to use a hash map for every iteration, depending on which implementation is used. |
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I've been using paths quite a lot in bdsg and found that a couple methods would simplify things:
Based on the existing methods
prepend_step
andappend_step
, pop should be equivalently complex for each implementation. As it is now I am using this to "pop" elements:And for the path renaming, I copy the entire path and delete the old one, so it would be cool if there was a copy-free method.
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