{\rtf1\ansi\ansicpg1252\cocoartf2761 \cocoatextscaling0\cocoaplatform0{\fonttbl\f0\fswiss\fcharset0 Helvetica;} {\colortbl;\red255\green255\blue255;} {\*\expandedcolortbl;;} \paperw11900\paperh16840\margl1440\margr1440\vieww11520\viewh8400\viewkind0 \pard\tx720\tx1440\tx2160\tx2880\tx3600\tx4320\tx5040\tx5760\tx6480\tx7200\tx7920\tx8640\pardirnatural\partightenfactor0 \f0\fs24 \cf0 Jun-19 13:41:10.546 [main] DEBUG nextflow.cli.Launcher - $> nextflow run nf-core/xxx -profile test,docker\ Jun-19 13:41:10.800 [main] DEBUG nextflow.cli.CmdRun - N E X T F L O W ~ version 24.04.2\ Jun-19 13:41:10.853 [main] DEBUG nextflow.plugin.PluginsFacade - Setting up plugin manager > mode=prod; embedded=false; plugins-dir=/Users/kenneth/.nextflow/plugins; core-plugins: nf-amazon@2.5.2,nf-azure@1.6.0,nf-cloudcache@0.4.1,nf-codecommit@0.2.0,nf-console@1.1.3,nf-ga4gh@1.3.0,nf-google@1.13.2,nf-tower@1.9.1,nf-wave@1.4.2\ Jun-19 13:41:10.880 [main] INFO o.pf4j.DefaultPluginStatusProvider - Enabled plugins: []\ Jun-19 13:41:10.881 [main] INFO o.pf4j.DefaultPluginStatusProvider - Disabled plugins: []\ Jun-19 13:41:10.887 [main] INFO org.pf4j.DefaultPluginManager - PF4J version 3.10.0 in 'deployment' mode\ Jun-19 13:41:10.926 [main] INFO org.pf4j.AbstractPluginManager - No plugins\ Jun-19 13:41:10.953 [main] DEBUG nextflow.scm.ProviderConfig - Using SCM config path: /Users/kenneth/.nextflow/scm\ Jun-19 13:41:11.036 [main] DEBUG nextflow.scm.RepositoryFactory - Found Git repository result: [RepositoryFactory]\ Jun-19 13:41:11.058 [main] INFO nextflow.cli.CmdRun - Pulling nf-core/xxx ...\ Jun-19 13:41:11.067 [main] DEBUG nextflow.scm.RepositoryProvider - Request [credentials -:-] -> https://api.github.com/repos/nf-core/xxx/contents/nextflow.config\ Jun-19 13:41:11.952 [main] DEBUG nextflow.scm.RepositoryProvider - Response status: 404 -- \{"message":"Not Found","documentation_url":"https://docs.github.com/rest/repos/contents#get-repository-content","status":"404"\}\ Jun-19 13:41:12.040 [main] WARN nextflow.scm.AssetManager - Cannot read project manifest -- Cause: Remote resource not found: https://api.github.com/repos/nf-core/xxx/contents/nextflow.config\ nextflow.exception.AbortOperationException: Remote resource not found: https://api.github.com/repos/nf-core/xxx/contents/nextflow.config\ at nextflow.scm.RepositoryProvider.checkResponse(RepositoryProvider.groovy:240)\ at nextflow.scm.RepositoryProvider.invoke(RepositoryProvider.groovy:181)\ at nextflow.scm.RepositoryProvider.memoizedMethodPriv$invokeAndParseResponseString(RepositoryProvider.groovy:282)\ at java.base/jdk.internal.reflect.DirectMethodHandleAccessor.invoke(DirectMethodHandleAccessor.java:103)\ at java.base/java.lang.reflect.Method.invoke(Method.java:580)\ at org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:343)\ at groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:328)\ at groovy.lang.MetaClassImpl.doInvokeMethod(MetaClassImpl.java:1333)\ at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1088)\ at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1007)\ at org.codehaus.groovy.runtime.InvokerHelper.invokePogoMethod(InvokerHelper.java:645)\ at org.codehaus.groovy.runtime.InvokerHelper.invokeMethod(InvokerHelper.java:628)\ at org.codehaus.groovy.runtime.InvokerHelper.invokeMethodSafe(InvokerHelper.java:82)\ at nextflow.scm.RepositoryProvider$_closure3.doCall(RepositoryProvider.groovy)\ at java.base/jdk.internal.reflect.DirectMethodHandleAccessor.invoke(DirectMethodHandleAccessor.java:103)\ at java.base/java.lang.reflect.Method.invoke(Method.java:580)\ at org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:343)\ at groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:328)\ at org.codehaus.groovy.runtime.metaclass.ClosureMetaClass.invokeMethod(ClosureMetaClass.java:279)\ at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1007)\ at groovy.lang.Closure.call(Closure.java:433)\ at org.codehaus.groovy.runtime.memoize.Memoize$MemoizeFunction.lambda$call$0(Memoize.java:137)\ at org.codehaus.groovy.runtime.memoize.ConcurrentCommonCache.getAndPut(ConcurrentCommonCache.java:137)\ at org.codehaus.groovy.runtime.memoize.ConcurrentCommonCache.getAndPut(ConcurrentCommonCache.java:113)\ at org.codehaus.groovy.runtime.memoize.Memoize$MemoizeFunction.call(Memoize.java:136)\ at groovy.lang.Closure.call(Closure.java:422)\ at nextflow.scm.RepositoryProvider.invokeAndParseResponse(RepositoryProvider.groovy)\ at nextflow.scm.GithubRepositoryProvider.readBytes(GithubRepositoryProvider.groovy:117)\ at nextflow.scm.RepositoryProvider.readText(RepositoryProvider.groovy:296)\ at nextflow.scm.AssetManager.getManifest0(AssetManager.groovy:437)\ at nextflow.scm.AssetManager.memoizedMethodPriv$getManifest(AssetManager.groovy:430)\ at java.base/jdk.internal.reflect.DirectMethodHandleAccessor.invoke(DirectMethodHandleAccessor.java:103)\ at java.base/java.lang.reflect.Method.invoke(Method.java:580)\ at org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:343)\ at groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:328)\ at groovy.lang.MetaClassImpl.doInvokeMethod(MetaClassImpl.java:1333)\ at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1088)\ at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1007)\ at org.codehaus.groovy.runtime.InvokerHelper.invokePogoMethod(InvokerHelper.java:645)\ at org.codehaus.groovy.runtime.InvokerHelper.invokeMethod(InvokerHelper.java:628)\ at org.codehaus.groovy.runtime.InvokerHelper.invokeMethodSafe(InvokerHelper.java:82)\ at nextflow.scm.AssetManager$_closure2.doCall(AssetManager.groovy)\ at nextflow.scm.AssetManager$_closure2.doCall(AssetManager.groovy)\ at java.base/jdk.internal.reflect.DirectMethodHandleAccessor.invoke(DirectMethodHandleAccessor.java:103)\ at java.base/java.lang.reflect.Method.invoke(Method.java:580)\ at org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:343)\ at groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:328)\ at org.codehaus.groovy.runtime.metaclass.ClosureMetaClass.invokeMethod(ClosureMetaClass.java:279)\ at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1007)\ at groovy.lang.Closure.call(Closure.java:433)\ at org.codehaus.groovy.runtime.memoize.Memoize$MemoizeFunction.lambda$call$0(Memoize.java:137)\ at org.codehaus.groovy.runtime.memoize.ConcurrentCommonCache.getAndPut(ConcurrentCommonCache.java:137)\ at org.codehaus.groovy.runtime.memoize.ConcurrentCommonCache.getAndPut(ConcurrentCommonCache.java:113)\ at org.codehaus.groovy.runtime.memoize.Memoize$MemoizeFunction.call(Memoize.java:136)\ at groovy.lang.Closure.call(Closure.java:412)\ at nextflow.scm.AssetManager.getManifest(AssetManager.groovy)\ at nextflow.scm.AssetManager.getMainScriptName(AssetManager.groovy:413)\ at nextflow.scm.AssetManager.checkValidRemoteRepo(AssetManager.groovy:371)\ at nextflow.scm.AssetManager.download(AssetManager.groovy:580)\ at nextflow.cli.CmdRun.getScriptFile0(CmdRun.groovy:580)\ at nextflow.cli.CmdRun.getScriptFile(CmdRun.groovy:513)\ at nextflow.cli.CmdRun.run(CmdRun.groovy:321)\ at nextflow.cli.Launcher.run(Launcher.groovy:503)\ at nextflow.cli.Launcher.main(Launcher.groovy:657)\ Jun-19 13:41:12.093 [main] DEBUG nextflow.scm.RepositoryProvider - Request [credentials -:-] -> https://api.github.com/repos/nf-core/xxx/contents/main.nf\ Jun-19 13:41:12.224 [main] DEBUG nextflow.scm.RepositoryProvider - Response status: 404 -- \{"message":"Not Found","documentation_url":"https://docs.github.com/rest/repos/contents#get-repository-content","status":"404"\}\ Jun-19 13:41:12.245 [main] DEBUG nextflow.cli.Launcher - Operation aborted\ nextflow.exception.AbortOperationException: Remote resource not found: https://api.github.com/repos/nf-core/xxx/contents/main.nf\ at nextflow.scm.RepositoryProvider.checkResponse(RepositoryProvider.groovy:240)\ at nextflow.scm.RepositoryProvider.invoke(RepositoryProvider.groovy:181)\ at nextflow.scm.RepositoryProvider.memoizedMethodPriv$invokeAndParseResponseString(RepositoryProvider.groovy:282)\ at java.base/jdk.internal.reflect.DirectMethodHandleAccessor.invoke(DirectMethodHandleAccessor.java:103)\ at java.base/java.lang.reflect.Method.invoke(Method.java:580)\ at org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:343)\ at groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:328)\ at groovy.lang.MetaClassImpl.doInvokeMethod(MetaClassImpl.java:1333)\ at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1088)\ at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1007)\ at org.codehaus.groovy.runtime.InvokerHelper.invokePogoMethod(InvokerHelper.java:645)\ at org.codehaus.groovy.runtime.InvokerHelper.invokeMethod(InvokerHelper.java:628)\ at org.codehaus.groovy.runtime.InvokerHelper.invokeMethodSafe(InvokerHelper.java:82)\ at nextflow.scm.RepositoryProvider$_closure3.doCall(RepositoryProvider.groovy)\ at java.base/jdk.internal.reflect.DirectMethodHandleAccessor.invoke(DirectMethodHandleAccessor.java:103)\ at java.base/java.lang.reflect.Method.invoke(Method.java:580)\ at org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:343)\ at groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:328)\ at org.codehaus.groovy.runtime.metaclass.ClosureMetaClass.invokeMethod(ClosureMetaClass.java:279)\ at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1007)\ at groovy.lang.Closure.call(Closure.java:433)\ at org.codehaus.groovy.runtime.memoize.Memoize$MemoizeFunction.lambda$call$0(Memoize.java:137)\ at org.codehaus.groovy.runtime.memoize.ConcurrentCommonCache.getAndPut(ConcurrentCommonCache.java:137)\ at org.codehaus.groovy.runtime.memoize.ConcurrentCommonCache.getAndPut(ConcurrentCommonCache.java:113)\ at org.codehaus.groovy.runtime.memoize.Memoize$MemoizeFunction.call(Memoize.java:136)\ at groovy.lang.Closure.call(Closure.java:422)\ at nextflow.scm.RepositoryProvider.invokeAndParseResponse(RepositoryProvider.groovy)\ at nextflow.scm.GithubRepositoryProvider.readBytes(GithubRepositoryProvider.groovy:117)\ at nextflow.scm.RepositoryProvider.validateFor(RepositoryProvider.groovy:310)\ at nextflow.scm.AssetManager.checkValidRemoteRepo(AssetManager.groovy:372)\ at nextflow.scm.AssetManager.download(AssetManager.groovy:580)\ at nextflow.cli.CmdRun.getScriptFile0(CmdRun.groovy:580)\ at nextflow.cli.CmdRun.getScriptFile(CmdRun.groovy:513)\ at nextflow.cli.CmdRun.run(CmdRun.groovy:321)\ at nextflow.cli.Launcher.run(Launcher.groovy:503)\ at nextflow.cli.Launcher.main(Launcher.groovy:657)\ }