-
Notifications
You must be signed in to change notification settings - Fork 238
/
rt.sh
executable file
·1363 lines (1172 loc) · 42.4 KB
/
rt.sh
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
#!/bin/bash
set -eu
set -o errexit #Lets trap exit info as error for logging
echo "******Regression Testing Script Started******"
SECONDS=0
hostname
die() { echo "$@" >&2; exit 1; }
usage() {
set +x #No reason to print out a bunch of echo statements here
echo
echo "Usage: $0 -a <account> | -b <file> | -c | -d | -e | -h | -k | -l <file> | -m | -n <name> | -o | -r | -v | -w"
echo
echo " -a <account> to use on for HPC queue"
echo " -b create new baselines only for tests listed in <file>"
echo " -c create new baseline results"
echo " -d delete run direcotries that are not used by other tests"
echo " -e use ecFlow workflow manager"
echo " -h display this help"
echo " -k keep run directory after rt.sh is completed"
echo " -l runs test specified in <file>"
echo " -m compare against new baseline results"
echo " -n run single test <name>"
echo " -o compile only, skip tests"
echo " -r use Rocoto workflow manager"
echo " -v verbose output"
echo " -w for weekly_test, skip comparing baseline results"
echo
}
[[ $# -eq 0 ]] && usage
update_rtconf() {
echo "rt.sh: Checking & Updating test configuration..."
find_match() {
# This function finds if a test in $TESTS_FILE matches one
# in our list of tests to be run.
THIS_TEST_WITH_COMPILER=$1
shift
TWC=("$@")
FOUND=false
for i in "${!TWC[@]}"; do
if [[ "${TWC[${i}]}" == "${THIS_TEST_WITH_COMPILER}" ]]; then
FOUND=true
echo "${i}"
return
fi
done
if [[ ${FOUND} == false ]]; then
echo "-1"
fi
}
# This script will update the rt.conf ($TESTS_FILE) if needed by the
# -b or -n options being called/used.
# THE USER CHOSE THE -b OPTION
if [[ ${NEW_BASELINES_FILE} != '' ]]; then
[[ -s "${NEW_BASELINES_FILE}" ]] || die "${NEW_BASELINES_FILE} is empty, exiting..."
TEST_WITH_COMPILE=()
readarray -t TEST_WITH_COMPILE < "${NEW_BASELINES_FILE}"
# else USER CHOSE THE -n OPTION
elif [[ ${RUN_SINGLE_TEST} == true ]]; then
TEST_WITH_COMPILE=("${SRT_NAME} ${SRT_COMPILER}")
else
echo "No update needed to rt.conf"
return
fi
RT_TEMP_CONF="rt_temp.conf"
rm -f "${RT_TEMP_CONF}" && touch "${RT_TEMP_CONF}"
local compile_line=''
while read -r line || [[ -n "${line}" ]]; do
line="${line#"${line%%[![:space:]]*}"}"
[[ -n "${line}" ]] || continue
[[ ${#line} == 0 ]] && continue
[[ ${line} == \#* ]] && continue
if [[ ${line} =~ COMPILE ]] ; then
MACHINES=$(cut -d'|' -f5 <<< "${line}")
MACHINES=$(sed -e 's/^ *//' -e 's/ *$//' <<< "${MACHINES}")
RT_COMPILER_IN=$(cut -d'|' -f3 <<< "${line}")
RT_COMPILER_IN=$(sed -e 's/^ *//' -e 's/ *$//' <<< "${RT_COMPILER_IN}")
if [[ ${MACHINES} == '' ]]; then
compile_line=${line}
COMPILE_LINE_USED=false
elif [[ ${MACHINES} == -* ]]; then
[[ ${MACHINES} =~ ${MACHINE_ID} ]] || compile_line=${line}; COMPILE_LINE_USED=false
elif [[ ${MACHINES} == +* ]]; then
[[ ${MACHINES} =~ ${MACHINE_ID} ]] && compile_line=${line}; COMPILE_LINE_USED=false
fi
fi
if [[ ${line} =~ RUN ]]; then
to_run_test=false
tmp_test=$(cut -d'|' -f2 <<< "${line}")
tmp_test=$(sed -e 's/^ *//' -e 's/ *$//' <<< "${tmp_test}")
MACHINES=$(cut -d'|' -f3 <<< "${line}")
MACHINES=$(sed -e 's/^ *//' -e 's/ *$//' <<< "${MACHINES}")
if [[ ${MACHINES} == '' ]]; then
to_run_test=true
elif [[ ${MACHINES} == -* ]]; then
[[ ${MACHINES} =~ ${MACHINE_ID} ]] || to_run_test=true
elif [[ ${MACHINES} == +* ]]; then
[[ ${MACHINES} =~ ${MACHINE_ID} ]] && to_run_test=true
fi
if [[ ${to_run_test} == true ]]; then
TEST_IDX=$(set -e; find_match "${tmp_test} ${RT_COMPILER_IN}" "${TEST_WITH_COMPILE[@]}")
if [[ ${TEST_IDX} != -1 ]]; then
if [[ ${COMPILE_LINE_USED} == false ]]; then
echo -en '\n' >> "${RT_TEMP_CONF}"
echo "${compile_line}" >> "${RT_TEMP_CONF}"
COMPILE_LINE_USED=true
fi
dep_test=$(grep -w "${tmp_test}" <<< "${line}")
dep_test=$(cut -d'|' -f5 <<< "${dep_test}")
dep_test=$(sed -e 's/^ *//' -e 's/ *$//' <<< "${dep_test}")
if [[ ${dep_test} != '' ]]; then
find_match_result=$(set -e; find_match "${dep_test} ${RT_COMPILER_IN}" "${TEST_WITH_COMPILE[@]}")
if [[ ${find_match_result} == -1 ]]; then
dep_line=$(grep -w "${dep_test}" rt.conf)
dep_line=$(grep -v "${tmp_test}" <<< "${dep_line}")
dep_line="${dep_line#"${dep_line%%[![:space:]]*}"}"
dep_line=$(tr -d '\n' <<< "${dep_line}")
CORRECT_LINE[1]=$(awk -F'RUN|RUN' '{print $2}' <<< "${dep_line}")
CORRECT_LINE[2]=$(awk -F'RUN|RUN' '{print $3}' <<< "${dep_line}")
if [[ ${RT_COMPILER_IN} == "intel" ]]; then
echo "RUN ${CORRECT_LINE[1]}" >> "${RT_TEMP_CONF}"
elif [[ ${RT_COMPILER_IN} == "gnu" ]]; then
echo "RUN ${CORRECT_LINE[2]}" >> "${RT_TEMP_CONF}"
fi
fi
fi
echo "${line}" >> "${RT_TEMP_CONF}"
fi
fi
fi
done < "${TESTS_FILE}"
if [[ ! -s ${RT_TEMP_CONF} ]]; then
echo "The tests listed/chosen do not exist or cannot be run on ${MACHINE_ID}"
exit 1
else
TESTS_FILE=${RT_TEMP_CONF}
fi
}
generate_log() {
echo "rt.sh: Generating Regression Testing Log..."
COMPILE_COUNTER=0
FAILED_COMPILES=()
TEST_COUNTER=0
FAILED_TESTS=()
SKIPPED_TESTS=()
FAILED_TEST_ID=()
FAILED_COMPILE_LOGS=()
FAILED_TEST_LOGS=()
TEST_CHANGES_LOG="test_changes.list"
TEST_END_TIME="$(date '+%Y%m%d %T')"
GIT_HASHES=$(git rev-parse HEAD)
cat << EOF > "${REGRESSIONTEST_LOG}"
====START OF ${MACHINE_ID^^} REGRESSION TESTING LOG====
UFSWM hash used in testing:
${GIT_HASHES}
Submodule hashes used in testing:
EOF
cd ..
if [[ ${MACHINE_ID} != hera ]]; then
git submodule status --recursive >> "${REGRESSIONTEST_LOG}"
else
git submodule status >> "${REGRESSIONTEST_LOG}"
fi
echo; echo >> "${REGRESSIONTEST_LOG}"
cd tests
cat << EOF >> "${REGRESSIONTEST_LOG}"
NOTES:
[Times](Memory) are at the end of each compile/test in format [MM:SS](Size).
The first time is for the full script (prep+run+finalize).
The second time is specifically for the run phase.
Times/Memory will be empty for failed tests.
BASELINE DIRECTORY: ${RTPWD}
COMPARISON DIRECTORY: ${RUNDIR_ROOT}
RT.SH OPTIONS USED:
EOF
[[ -n ${ACCNR} ]] && echo "* (-a) - HPC PROJECT ACCOUNT: ${ACCNR}" >> "${REGRESSIONTEST_LOG}"
[[ -n ${NEW_BASELINES_FILE} ]] && echo "* (-b) - NEW BASELINES FROM FILE: ${NEW_BASELINES_FILE}" >> "${REGRESSIONTEST_LOG}"
[[ ${CREATE_BASELINE} == true ]] && echo "* (-c) - CREATE NEW BASELINES" >> "${REGRESSIONTEST_LOG}"
[[ ${DEFINE_CONF_FILE} == true ]] && echo "* (-l) - USE CONFIG FILE: ${TESTS_FILE}" >> "${REGRESSIONTEST_LOG}"
[[ ${RTPWD_NEW_BASELINE} == true ]] && echo "* (-m) - COMPARE AGAINST CREATED BASELINES" >> "${REGRESSIONTEST_LOG}"
[[ ${RUN_SINGLE_TEST} == true ]] && echo "* (-n) - RUN SINGLE TEST: ${SINGLE_OPTS}" >> "${REGRESSIONTEST_LOG}"
[[ ${COMPILE_ONLY} == true ]]&& echo "* (-o) - COMPILE ONLY, SKIP TESTS" >> "${REGRESSIONTEST_LOG}"
[[ ${delete_rundir} == true ]] && echo "* (-d) - DELETE RUN DIRECTORY" >> "${REGRESSIONTEST_LOG}"
[[ ${skip_check_results} == true ]] && echo "* (-w) - SKIP RESULTS CHECK" >> "${REGRESSIONTEST_LOG}"
[[ ${KEEP_RUNDIR} == true ]] && echo "* (-k) - KEEP RUN DIRECTORY" >> "${REGRESSIONTEST_LOG}"
[[ ${ROCOTO} == true ]] && echo "* (-r) - USE ROCOTO" >> "${REGRESSIONTEST_LOG}"
[[ ${ECFLOW} == true ]] && echo "* (-e) - USE ECFLOW" >> "${REGRESSIONTEST_LOG}"
[[ ${RTVERBOSE} == true ]] && echo "* (-v) - VERBOSE OUTPUT" >> "${REGRESSIONTEST_LOG}"
[[ -f "${TEST_CHANGES_LOG}" ]] && rm "${TEST_CHANGES_LOG}"
touch "${TEST_CHANGES_LOG}"
while read -r line; do
line="${line#"${line%%[![:space:]]*}"}"
[[ -n "${line}" ]] || continue
[[ ${#line} == 0 ]] && continue
[[ ${line} == \#* ]] && continue
local valid_compile=false
local valid_test=false
if [[ ${line} == COMPILE* ]] ; then
CMACHINES=$(cut -d'|' -f5 <<< "${line}")
CMACHINES=$(sed -e 's/^ *//' -e 's/ *$//' <<< "${CMACHINES}")
COMPILER=$(cut -d'|' -f3 <<< "${line}")
COMPILER=$(sed -e 's/^ *//' -e 's/ *$//' <<< "${COMPILER}")
COMPILE_NAME=$(cut -d'|' -f2 <<< "${line}")
COMPILE_NAME=$(sed -e 's/^ *//' -e 's/ *$//' <<< "${COMPILE_NAME}")
COMPILE_ID=${COMPILE_NAME}_${COMPILER}
if [[ ${CMACHINES} == '' ]]; then
valid_compile=true
elif [[ ${CMACHINES} == -* ]]; then
[[ ${CMACHINES} =~ ${MACHINE_ID} ]] || valid_compile=true
elif [[ ${CMACHINES} == +* ]]; then
[[ ${CMACHINES} =~ ${MACHINE_ID} ]] && valid_compile=true
fi
if [[ ${valid_compile} == true ]]; then
COMPILE_COUNTER=$((COMPILE_COUNTER+1))
FAIL_LOG=""
COMPILE_RESULT=""
TIME_FILE=""
COMPILE_TIME=""
RT_COMPILE_TIME=""
COMPILE_WARNINGS=""
if [[ ! -f "${LOG_DIR}/compile_${COMPILE_ID}.log" ]]; then
COMPILE_RESULT="FAILED: UNABLE TO START COMPILE"
FAIL_LOG="N/A"
elif [[ -f fail_compile_${COMPILE_ID} ]]; then
COMPILE_RESULT="FAILED: UNABLE TO FINISH COMPILE"
FAIL_LOG="${LOG_DIR}/compile_${COMPILE_ID}.log"
if grep -q "quota" "${LOG_DIR}/compile_${COMPILE_ID}.log"; then
COMPILE_RESULT="FAILED: DISK QUOTA ISSUE"
FAIL_LOG="${LOG_DIR}/compile_${COMPILE_ID}.log"
elif grep -q "TIME LIMIT" "${RUNDIR_ROOT}/compile_${COMPILE_ID}/err"; then
COMPILE_RESULT="FAILED: COMPILE TIMED OUT"
FAIL_LOG="${RUNDIR_ROOT}/compile_${COMPILE_ID}/err"
fi
else
COMPILE_RESULT="PASS"
if [[ ${COMPILER} == "intel" ]]; then
COMPILE_NUM_WARNINGS=$(grep -c ": warning #" "${RUNDIR_ROOT}/compile_${COMPILE_ID}/err" || true)
COMPILE_NUM_REMARKS=$(grep -c ": remark #" "${RUNDIR_ROOT}/compile_${COMPILE_ID}/err" || true)
if [[ ${COMPILE_NUM_WARNINGS} -gt 0 || ${COMPILE_NUM_REMARKS} -gt 0 ]]; then
COMPILE_WARNINGS+=" ("
[[ ${COMPILE_NUM_WARNINGS} -gt 0 ]] && COMPILE_WARNINGS+=" ${COMPILE_NUM_WARNINGS} warnings"
[[ ${COMPILE_NUM_REMARKS} -gt 0 ]] && COMPILE_WARNINGS+=" ${COMPILE_NUM_REMARKS} remarks"
COMPILE_WARNINGS+=" )"
fi
fi
TIME_FILE="${LOG_DIR}/compile_${COMPILE_ID}_timestamp.txt"
if [[ -f "${TIME_FILE}" ]]; then
while read -r times || [[ -n "${times}" ]]; do
times="${times#"${times%%[![:space:]]*}"}"
DATE1=$(cut -d ',' -f2 <<< "${times}")
DATE2=$(cut -d ',' -f3 <<< "${times}")
DATE3=$(cut -d ',' -f4 <<< "${times}")
DATE4=$(cut -d ',' -f5 <<< "${times}")
COMPILE_TIME=$(date --date=@$((DATE3 - DATE2)) +'%M:%S')
RT_COMPILE_TIME=$(date --date=@$((DATE4 - DATE1)) +'%M:%S')
done < "${TIME_FILE}"
fi
fi
echo >> "${REGRESSIONTEST_LOG}"
echo "${COMPILE_RESULT} -- COMPILE '${COMPILE_ID}' [${RT_COMPILE_TIME}, ${COMPILE_TIME}]${COMPILE_WARNINGS}" >> "${REGRESSIONTEST_LOG}"
[[ -n ${FAIL_LOG} ]] && FAILED_COMPILES+=("COMPILE ${COMPILE_ID}: ${COMPILE_RESULT}")
[[ -n ${FAIL_LOG} ]] && FAILED_COMPILE_LOGS+=("${FAIL_LOG}")
fi
elif [[ ${line} =~ RUN ]]; then
if [[ ${COMPILE_ONLY} == true ]]; then
continue
fi
RMACHINES=$(cut -d '|' -f3 <<< "${line}")
RMACHINES=$(sed -e 's/^ *//' -e 's/ *$//' <<< "${RMACHINES}")
TEST_NAME=$(cut -d '|' -f2 <<< "${line}")
TEST_NAME=$(sed -e 's/^ *//' -e 's/ *$//' <<< "${TEST_NAME}")
GEN_BASELINE=$(cut -d '|' -f4 <<< "${line}")
GEN_BASELINE=$(sed -e 's/^ *//' -e 's/ *$//' <<< "${GEN_BASELINE}")
if [[ ${RMACHINES} == '' ]]; then
valid_test=true
elif [[ ${RMACHINES} == -* ]]; then
[[ ${RMACHINES} =~ ${MACHINE_ID} ]] || valid_test=true
elif [[ ${RMACHINES} == +* ]]; then
[[ ${RMACHINES} =~ ${MACHINE_ID} ]] && valid_test=true
fi
if [[ ${valid_test} == true ]]; then
TEST_COUNTER=$((TEST_COUNTER+1))
GETMEMFROMLOG=""
FAIL_LOG=""
TEST_RESULT=""
TIME_FILE=""
TEST_TIME=""
RT_TEST_TIME=""
RT_TEST_MEM=""
if [[ ${CREATE_BASELINE} == true && ${GEN_BASELINE} != "baseline" ]]; then
TEST_RESULT="SKIPPED: TEST DOES NOT GENERATE BASELINE"
SKIPPED_TESTS+=("TEST ${TEST_NAME}_${COMPILER}: ${TEST_RESULT}")
elif [[ ${COMPILE_RESULT} =~ FAILED ]]; then
TEST_RESULT="SKIPPED: ASSOCIATED COMPILE FAILED"
SKIPPED_TESTS+=("TEST ${TEST_NAME}_${COMPILER}: ${TEST_RESULT}")
elif [[ ! -f "${LOG_DIR}/run_${TEST_NAME}_${COMPILER}.log" ]]; then
TEST_RESULT="FAILED: UNABLE TO START TEST"
FAIL_LOG="N/A"
elif [[ -f fail_test_${TEST_NAME}_${COMPILER} ]]; then
if [[ -f "${LOG_DIR}/rt_${TEST_NAME}_${COMPILER}.log" ]]; then
if grep -q "FAIL" "${LOG_DIR}/rt_${TEST_NAME}_${COMPILER}.log"; then
TEST_RESULT="FAILED: UNABLE TO COMPLETE COMPARISON"
FAIL_LOG="${LOG_DIR}/run_${TEST_NAME}_${COMPILER}.log"
# We need to catch a "PASS" in rt_*.log even if a fail_test_* files exists
# I am not sure why this can happen.
elif grep -q "PASS" "${LOG_DIR}/rt_${TEST_NAME}_${COMPILER}.log"; then
TEST_RESULT="PASS"
else
TEST_RESULT="FAILED: UNSUCCESSFUL BASELINE COMPARISON"
FAIL_LOG="${LOG_DIR}/rt_${TEST_NAME}_${COMPILER}.log"
fi
else
TEST_RESULT="FAILED: RUN DID NOT COMPLETE"
FAIL_LOG="${LOG_DIR}/run_${TEST_NAME}_${COMPILER}.log"
fi
if grep -q "quota" "${LOG_DIR}/run_${TEST_NAME}_${COMPILER}.log"; then
TEST_RESULT="FAILED: DISK QUOTA ISSUE"
FAIL_LOG="${LOG_DIR}/run_${TEST_NAME}_${COMPILER}.log"
elif grep -q "TIME LIMIT" "${RUNDIR_ROOT}/${TEST_NAME}_${COMPILER}/err"; then
TEST_RESULT="FAILED: TEST TIMED OUT"
FAIL_LOG="${RUNDIR_ROOT}/${TEST_NAME}_${COMPILER}/err"
fi
else
TEST_RESULT="PASS"
fi
if [[ ${TEST_RESULT} == "PASS" ]]; then
TIME_FILE="${LOG_DIR}/run_${TEST_NAME}_${COMPILER}_timestamp.txt"
GETMEMFROMLOG=$(grep "The maximum resident set size" "${LOG_DIR}/rt_${TEST_NAME}_${COMPILER}.log")
RT_TEST_MEM=$(echo "${GETMEMFROMLOG:9:${#GETMEMFROMLOG}-1}" | tr -dc '0-9')
RT_TEST_MEM=$((RT_TEST_MEM/1000))
if [[ -f "${TIME_FILE}" ]]; then
while read -r times || [[ -n "${times}" ]]; do
times="${times#"${times%%[![:space:]]*}"}"
DATE1=$(cut -d ',' -f2 <<< "${times}")
DATE2=$(cut -d ',' -f3 <<< "${times}")
DATE3=$(cut -d ',' -f4 <<< "${times}")
DATE4=$(cut -d ',' -f5 <<< "${times}")
TEST_TIME=$(date --date=@$((DATE3 - DATE2)) +'%M:%S')
RT_TEST_TIME=$(date --date=@$((DATE4 - DATE1)) +'%M:%S')
done < "${TIME_FILE}"
fi
fi
echo "${TEST_RESULT} -- TEST '${TEST_NAME}_${COMPILER}' [${RT_TEST_TIME}, ${TEST_TIME}](${RT_TEST_MEM} MB)" >> "${REGRESSIONTEST_LOG}"
[[ -n ${FAIL_LOG} ]] && FAILED_TESTS+=("TEST ${TEST_NAME}_${COMPILER}: ${TEST_RESULT}")
[[ -n ${FAIL_LOG} ]] && FAILED_TEST_LOGS+=("${FAIL_LOG}")
[[ -n ${FAIL_LOG} ]] && FAILED_TEST_ID+=("${TEST_NAME} ${COMPILER}")
fi
fi
done < "${TESTS_FILE}"
elapsed_time=$( printf '%02dh:%02dm:%02ds\n' $((SECONDS%86400/3600)) $((SECONDS%3600/60)) $((SECONDS%60)) )
cat << EOF >> "${REGRESSIONTEST_LOG}"
SYNOPSIS:
Starting Date/Time: ${TEST_START_TIME}
Ending Date/Time: ${TEST_END_TIME}
Total Time: ${elapsed_time}
Compiles Completed: $((COMPILE_COUNTER-${#FAILED_COMPILES[@]}))/${COMPILE_COUNTER}
Tests Completed: $((TEST_COUNTER-${#FAILED_TESTS[@]}-${#SKIPPED_TESTS[@]}))/${TEST_COUNTER}
EOF
# PRINT FAILED COMPILES
if [[ "${#FAILED_COMPILES[@]}" -ne "0" ]]; then
echo "Failed Compiles:" >> "${REGRESSIONTEST_LOG}"
for i in "${!FAILED_COMPILES[@]}"; do
echo "* ${FAILED_COMPILES[${i}]}" >> "${REGRESSIONTEST_LOG}"
echo "-- LOG: ${FAILED_COMPILE_LOGS[${i}]}" >> "${REGRESSIONTEST_LOG}"
done
fi
# PRINT FAILED TESTS
if [[ "${#FAILED_TESTS[@]}" -ne "0" ]]; then
echo "Failed Tests:" >> "${REGRESSIONTEST_LOG}"
for j in "${!FAILED_TESTS[@]}"; do
echo "* ${FAILED_TESTS[${j}]}" >> "${REGRESSIONTEST_LOG}"
echo "-- LOG: ${FAILED_TEST_LOGS[${j}]}" >> "${REGRESSIONTEST_LOG}"
done
fi
# WRITE FAILED_TEST_ID LIST TO TEST_CHANGES_LOG
if [[ "${#FAILED_TESTS[@]}" -ne "0" ]]; then
for item in "${FAILED_TEST_ID[@]}"; do
echo "${item}" >> "${TEST_CHANGES_LOG}"
done
fi
if [[ "${#FAILED_COMPILES[@]}" -eq "0" && "${#FAILED_TESTS[@]}" -eq "0" ]]; then
cat << EOF >> "${REGRESSIONTEST_LOG}"
NOTES:
A file '${TEST_CHANGES_LOG}' was generated but is empty.
If you are using this log as a pull request verification, please commit '${TEST_CHANGES_LOG}'.
Result: SUCCESS
====END OF ${MACHINE_ID^^} REGRESSION TESTING LOG====
EOF
echo "Performing Cleanup..."
rm -f fv3_*.x fv3_*.exe modules.fv3_* modulefiles/modules.fv3_* keep_tests.tmp
[[ ${KEEP_RUNDIR} == false ]] && rm -rf "${RUNDIR_ROOT}" && rm "${PATHRT}/run_dir"
[[ ${ROCOTO} == true ]] && rm -f "${ROCOTO_XML}" "${ROCOTO_DB}" "${ROCOTO_STATE}" ./*_lock.db
[[ ${TEST_35D} == true ]] && rm -f tests/cpld_bmark*_20*
echo "REGRESSION TEST RESULT: SUCCESS"
else
cat << EOF >> "${REGRESSIONTEST_LOG}"
NOTES:
A file '${TEST_CHANGES_LOG}' was generated with list of all failed tests.
You can use './rt.sh -c -b test_changes.list' to create baselines for the failed tests.
If you are using this log as a pull request verification, please commit '${TEST_CHANGES_LOG}'.
Result: FAILURE
====END OF ${MACHINE_ID^^} REGRESSION TESTING LOG====
EOF
echo "REGRESSION TEST RESULT: FAILURE"
fi
}
create_or_run_compile_task() {
cat << EOF > "${RUNDIR_ROOT}/compile_${COMPILE_ID}.env"
export COMPILE_ID=${COMPILE_ID}
export MACHINE_ID=${MACHINE_ID}
export RT_COMPILER=${RT_COMPILER}
export PATHRT=${PATHRT}
export PATHTR=${PATHTR}
export SCHEDULER=${SCHEDULER}
export ACCNR=${ACCNR}
export QUEUE=${COMPILE_QUEUE}
export PARTITION=${PARTITION}
export ROCOTO=${ROCOTO}
export ECFLOW=${ECFLOW}
export REGRESSIONTEST_LOG=${REGRESSIONTEST_LOG}
export LOG_DIR=${LOG_DIR}
export RTVERBOSE=${RTVERBOSE}
EOF
if [[ ${ROCOTO} == true ]]; then
rocoto_create_compile_task
elif [[ ${ECFLOW} == true ]]; then
ecflow_create_compile_task
else
echo "rt.sh: Running compile ${COMPILE_ID}"
./run_compile.sh "${PATHRT}" "${RUNDIR_ROOT}" "${MAKE_OPT}" "${COMPILE_ID}" > "${LOG_DIR}/compile_${COMPILE_ID}.log" 2>&1
echo "rt.sh: Compile ${COMPILE_ID} completed."
fi
RT_SUFFIX=""
BL_SUFFIX=""
}
rt_35d() {
echo "rt.sh: Running 35day Regression Test..."
local sy
local sm
if [[ ${TEST_NAME} =~ '35d' ]] ; then
sy=$(cut -c 1-4 <<< "${DATE_35D}")
sm=$(cut -c 5-6 <<< "${DATE_35D}")
local new_test_name="tests/${TEST_NAME}_${DATE_35D}"
rm -f "${new_test_name}"
cp tests/"${TEST_NAME}" "${new_test_name}"
sed -i -e "s/\(export SYEAR\)/\1=\"${sy}\"/" "${new_test_name}"
sed -i -e "s/\(export SMONTH\)/\1=\"${sm}\"/" "${new_test_name}"
TEST_NAME=${new_test_name#tests/}
fi
}
handle_error() {
echo "rt.sh: Getting error information..."
local exit_code=$1
local exit_line=$2
echo "Exited at line ${exit_line} having code ${exit_code}"
rt_trap
}
rt_trap() {
echo "rt.sh: Exited abnormally, killing workflow and cleaning up"
trap "" SIGINT
[[ ${ROCOTO:-false} == true ]] && rocoto_kill
[[ ${ECFLOW:-false} == true ]] && ecflow_kill
cleanup
}
cleanup() {
echo "rt.sh: Cleaning up..."
awk_info=$(awk '{print $2}' < "${LOCKDIR}/PID")
[[ ${awk_info} == "$$" ]] && rm -rf "${LOCKDIR}"
[[ ${ECFLOW:-false} == true ]] && ecflow_stop
trap 0
echo "rt.sh: Exiting."
exit
}
trap '{ echo "rt.sh interrupted"; rt_trap ; }' INT
trap '{ echo "rt.sh quit"; rt_trap ; }' QUIT
trap '{ echo "rt.sh terminated"; rt_trap ; }' TERM
trap '{ handle_error $? $LINENO ; }' ERR
trap '{ echo "rt.sh finished"; cleanup ; }' EXIT
# PATHRT - Path to regression tests directory
PATHRT="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd -P )"
readonly PATHRT
cd "${PATHRT}"
# PATHTR - Path to nmmb trunk directory
PATHTR=$( cd "${PATHRT}/.." && pwd )
readonly PATHTR
# make sure only one instance of rt.sh is running
readonly LOCKDIR="${PATHRT}"/lock
HOSTNAME_IN=$(hostname)
if mkdir "${LOCKDIR}" ; then
echo "${HOSTNAME_IN}" $$ > "${LOCKDIR}/PID"
else
echo "Only one instance of rt.sh can be running at a time"
exit 1
fi
source detect_machine.sh
source rt_utils.sh
# shellcheck disable=SC1091
source module-setup.sh
CREATE_BASELINE=false
ROCOTO=false
ECFLOW=false
KEEP_RUNDIR=false
TEST_35D=false
export skip_check_results=false
export delete_rundir=false
COMPILE_ONLY=false
RTPWD_NEW_BASELINE=false
TESTS_FILE='rt.conf'
NEW_BASELINES_FILE=''
DEFINE_CONF_FILE=false
RUN_SINGLE_TEST=false
RTVERBOSE=false
export RTVERBOSE
export STOP_ECFLOW_AT_END=false
ACCNR=${ACCNR:-""}
while getopts ":a:b:cl:mn:dwkreovh" opt; do
case ${opt} in
a)
ACCNR=${OPTARG}
;;
b)
NEW_BASELINES_FILE=${OPTARG}
;;
c)
CREATE_BASELINE=true
;;
l)
DEFINE_CONF_FILE=true
TESTS_FILE=${OPTARG}
grep -q '[^[:space:]]' < "${TESTS_FILE}" || die "${TESTS_FILE} empty, exiting..."
;;
o)
COMPILE_ONLY=true
;;
m)
# redefine RTPWD to point to newly created baseline outputs
RTPWD_NEW_BASELINE=true
;;
n)
RUN_SINGLE_TEST=true
IFS=' ' read -r -a SINGLE_OPTS <<< "${OPTARG}"
if [[ ${#SINGLE_OPTS[@]} != 2 ]]; then
die 'The -n option needs [testname] AND [compiler] in quotes, i.e. -n "control_p8 intel"'
fi
SRT_NAME="${SINGLE_OPTS[0]}"
SRT_COMPILER="${SINGLE_OPTS[1]}"
if [[ "${SRT_COMPILER}" != "intel" ]] && [[ "${SRT_COMPILER}" != "gnu" ]]; then
die "COMPILER MUST BE 'intel' OR 'gnu'"
fi
;;
d)
export delete_rundir=true
AWK_OUT=$(awk -F "|" '{print $5}' rt.conf)
grep "\S" <<< "${AWK_OUT}" > keep_tests.tmp
;;
w)
export skip_check_results=true
;;
k)
KEEP_RUNDIR=true
;;
r)
ROCOTO=true
ECFLOW=false
;;
e)
ECFLOW=true
ROCOTO=false
;;
v)
RTVERBOSE=true
;;
h)
usage
die ""
;;
\?)
usage
die "Invalid option: -${OPTARG}"
;;
:)
usage
die "Option -${OPTARG} requires an argument."
;;
*)
usage
die "Arguments are required."
;;
esac
done
#Check to error out if incompatible options are chosen together
[[ ${KEEP_RUNDIR} == true && ${delete_rundir} == true ]] && die "-k and -d options cannot be used at the same time"
[[ ${ECFLOW} == true && ${ROCOTO} == true ]] && die "-r and -e options cannot be used at the same time"
[[ ${CREATE_BASELINE} == true && ${RTPWD_NEW_BASELINE} == true ]] && die "-c and -m options cannot be used at the same time"
#B&N not run together
[[ ${NEW_BASELINES_FILE} != '' && ${RUN_SINGLE_TEST} == true ]] && die "-b and -n options cannot be used at the same time"
if [[ ${RTVERBOSE} == true ]]; then
set -x
fi
if [[ -z "${ACCNR}" ]]; then
echo "Please use -a <account> to set group account to use on HPC"
exit 1
fi
# Display the machine and account using the format detect_machine.sh used:
echo "Machine: ${MACHINE_ID}"
echo "Account: ${ACCNR}"
case ${MACHINE_ID} in
wcoss2|acorn)
echo "rt.sh: Setting up WCOSS2/Acorn"
if [[ "${ECFLOW:-false}" == true ]] ; then
module load ecflow/5.6.0.13
fi
module load intel/19.1.3.304 python/3.8.6
DISKNM="/lfs/h2/emc/nems/noscrub/emc.nems/RT"
QUEUE="dev"
COMPILE_QUEUE="dev"
if [[ "${ROCOTO:-false}" == true ]] ; then
ROCOTO_SCHEDULER="pbs"
fi
PARTITION=
STMP="/lfs/h2/emc/ptmp"
PTMP="/lfs/h2/emc/ptmp"
SCHEDULER="pbs"
;;
gaea)
echo "rt.sh: Setting up gaea..."
if [[ "${ROCOTO:-false}" == true ]] ; then
module use /ncrc/proj/epic/rocoto/modulefiles
module load rocoto
ROCOTO_SCHEDULER="slurm"
fi
export LD_PRELOAD=/opt/cray/pe/gcc/12.2.0/snos/lib64/libstdc++.so.6
module load PrgEnv-intel/8.3.3
module load intel-classic/2023.1.0
module load cray-mpich/8.1.25
module load python/3.9.12
module use /ncrc/proj/epic/spack-stack/modulefiles
module load gcc/12.2.0
if [[ "${ECFLOW:-false}" == true ]] ; then
module load ecflow/5.8.4
ECF_HOST=$(hostname)
ECF_PORT=$(( $(id -u) + 1500 ))
export ECF_PORT ECF_HOST
fi
DISKNM=/gpfs/f5/epic/world-shared/UFS-WM_RT
QUEUE=normal
COMPILE_QUEUE=normal
PARTITION=c5
dprefix=${dprefix:-/gpfs/f5/${ACCNR}/scratch/${USER}}
STMP=${STMP:-${dprefix}/RT_BASELINE}
PTMP=${PTMP:-${dprefix}/RT_RUNDIRS}
SCHEDULER="slurm"
;;
hera)
echo "rt.sh: Setting up hera..."
if [[ "${ROCOTO:-false}" == true ]] ; then
module load rocoto
ROCOTO_SCHEDULER=slurm
fi
if [[ "${ECFLOW:-false}" == true ]] ; then
module load ecflow/5.11.4
fi
QUEUE="batch"
COMPILE_QUEUE="batch"
PARTITION=
dprefix="/scratch1/NCEPDEV"
DISKNM="/scratch2/NAGAPE/epic/UFS-WM_RT"
STMP="${dprefix}/stmp4"
PTMP="${dprefix}/stmp2"
SCHEDULER=slurm
;;
orion)
echo "rt.sh: Setting up orion..."
module load git/2.28.0
module load gcc/10.2.0
module load python/3.9.2
if [[ "${ROCOTO:-false}" == true ]] ; then
module load contrib rocoto
ROCOTO_SCHEDULER="slurm"
fi
module use /work/noaa/epic/role-epic/spack-stack/orion/modulefiles
if [[ "${ECFLOW:-false}" == true ]] ; then
module load ecflow/5.8.4
ECF_HOST=$(hostname)
ECF_PORT="$(( $(id -u) + 1500 ))"
export ECF_PORT ECF_HOST
fi
QUEUE="batch"
COMPILE_QUEUE="batch"
PARTITION="orion"
dprefix="/work/noaa/stmp/${USER}"
DISKNM="/work/noaa/epic/UFS-WM_RT"
STMP="${dprefix}/stmp"
PTMP="${dprefix}/stmp"
SCHEDULER="slurm"
;;
hercules)
echo "rt.sh: Setting up hercules..."
if [[ "${ROCOTO:-false}" == true ]] ; then
module load contrib rocoto
ROCOTO_SCHEDULER="slurm"
fi
module use /work/noaa/epic/role-epic/spack-stack/hercules/modulefiles
if [[ "${ECFLOW:-false}" == true ]] ; then
module load ecflow/5.8.4
ECF_HOST=$(hostname)
ECF_PORT="$(( $(id -u) + 1500 ))"
export ECF_PORT ECF_HOST
fi
QUEUE="batch"
COMPILE_QUEUE="batch"
PARTITION="hercules"
dprefix="/work2/noaa/stmp/${USER}"
DISKNM="/work/noaa/epic/hercules/UFS-WM_RT"
STMP="${dprefix}/stmp"
PTMP="${dprefix}/stmp"
SCHEDULER="slurm"
cp fv3_conf/fv3_slurm.IN_hercules fv3_conf/fv3_slurm.IN
cp fv3_conf/compile_slurm.IN_hercules fv3_conf/compile_slurm.IN
;;
jet)
echo "rt.sh: Setting up jet..."
CurJetOS=$(lsb_release -is)
echo "=======Running on ${CurJetOS}======="
if [[ ${CurJetOS} == "CentOS" ]]; then
echo "=======Please, move to Rocky8 node fe[5-8]======="
exit 1
fi
if [[ "${ROCOTO:-false}" == true ]] ; then
module load rocoto
ROCOTO_SCHEDULER="slurm"
fi
if [[ "${ECFLOW:-false}" == true ]] ; then
module load ecflow/5.11.4
fi
module use /mnt/lfs4/HFIP/hfv3gfs/role.epic/spack-stack/spack-stack-1.5.0/envs/unified-env-rocky8/install/modulefiles/Core
module load stack-intel/2021.5.0
module load stack-python/3.10.8
QUEUE="batch"
COMPILE_QUEUE="batch"
PARTITION="xjet"
DISKNM="/mnt/lfs4/HFIP/hfv3gfs/role.epic/RT"
dprefix="${dprefix:-/lfs4/HFIP/${ACCNR}/${USER}}"
STMP="${STMP:-${dprefix}/RT_BASELINE}"
PTMP="${PTMP:-${dprefix}/RT_RUNDIRS}"
SCHEDULER="slurm"
;;
s4)
echo "rt.sh: Setting up s4..."
if [[ "${ROCOTO:-false}" == true ]] ; then
module load rocoto/1.3.2
ROCOTO_SCHEDULER=slurm
fi
if [[ "${ECFLOW:-false}" == true ]] ; then
module load ecflow/5.6.0
fi
module load miniconda/3.8-s4
module use /data/prod/jedi/spack-stack/modulefiles
if [[ "${ECFLOW:-false}" == true ]] ; then
module load ecflow/5.8.4
ECF_HOST=$(hostname)
ECF_PORT="$(( $(id -u) + 1500 ))"
export ECF_PORT ECF_HOST
fi
QUEUE="s4"
COMPILE_QUEUE="s4"
PARTITION="s4"
dprefix="/data/prod"
DISKNM="${dprefix}/emc.nemspara/RT"
STMP="/scratch/short/users"
PTMP="/scratch/users"
SCHEDULER="slurm"
;;
derecho)
echo "rt.sh: Setting up derecho..."
if [[ "${ROCOTO:-false}" == true ]] ; then
module use /glade/work/epicufsrt/contrib/derecho/rocoto/modulefiles
module load rocoto
fi
module use /glade/work/epicufsrt/contrib/spack-stack/derecho/modulefiles
if [[ "${ECFLOW:-false}" == true ]] ; then
module load ecflow/5.8.4
fi
module unload ncarcompilers
module use /glade/work/epicufsrt/contrib/spack-stack/derecho/spack-stack-1.5.1/envs/unified-env/install/modulefiles/Core
module load stack-intel/2021.10.0
module load stack-python/3.10.8
# export PYTHONPATH=/glade/p/ral/jntp/tools/miniconda3/4.8.3/envs/ufs-weather-model/lib/python3.8/site-packages:/glade/p/ral/jntp/tools/miniconda3/4.8.3/lib/python3.8/site-packages
if [[ "${ECFLOW:-false}" == true ]] ; then
ECF_HOST=$(hostname)
ECF_PORT=$(( $(id -u) + 1500 ))
export ECF_PORT ECF_HOST
fi
QUEUE="main"
COMPILE_QUEUE="main"
PARTITION=
dprefix="/glade/derecho/scratch"
DISKNM="/glade/derecho/scratch/epicufsrt/ufs-weather-model/RT/"
STMP="${dprefix}"
PTMP="${dprefix}"
SCHEDULER="pbs"
cp fv3_conf/fv3_qsub.IN_derecho fv3_conf/fv3_qsub.IN
cp fv3_conf/compile_qsub.IN_derecho fv3_conf/compile_qsub.IN
if [[ "${ROCOTO:-false}" == true ]] ; then
ROCOTO_SCHEDULER="pbspro"
fi
;;
stampede)
echo "rt.sh: Setting up stampede..."
export PYTHONPATH=
if [[ "${ECFLOW:-false}" == true ]] ; then
ECFLOW_START=
fi
QUEUE=skx-normal
COMPILE_QUEUE=skx-dev
PARTITION=
dprefix="${SCRATCH}/ufs-weather-model/run"
DISKNM="/work2/07736/minsukji/stampede2/ufs-weather-model/RT"
STMP="${dprefix}"
PTMP="${dprefix}"
SCHEDULER="slurm"
export MPIEXEC="ibrun"
export MPIEXECOPTS=
;;
expanse)
echo "rt.sh: Setting up expanse..."
export PYTHONPATH=
if [[ "${ECFLOW:-false}" == true ]] ; then
export ECFLOW_START=
fi
QUEUE="compute"
COMPILE_QUEUE="shared"
PARTITION=
dprefix="/expanse/lustre/scratch/${USER}/temp_project/run"
DISKNM="/expanse/lustre/scratch/domh/temp_project/RT"
STMP="${dprefix}"
PTMP="${dprefix}"
SCHEDULER="slurm"
;;
noaacloud)
echo "rt.sh: Setting up noaacloud..."
export PATH="/contrib/EPIC/bin:${PATH}"
module use /apps/modules/modulefiles
if [[ "${ROCOTO:-false}" == true ]] ; then
module load rocoto/1.3.3
ROCOTO_SCHEDULER=slurm
fi
QUEUE="batch"
COMPILE_QUEUE="batch"
PARTITION=
dprefix="/lustre/"
DISKNM="/contrib/ufs-weather-model/RT"
STMP="${dprefix}/stmp4"
PTMP="${dprefix}/stmp2"
SCHEDULER="slurm"
;;
*)
die "Unknown machine ID, please edit detect_machine.sh file"
;;
esac
mkdir -p "${STMP}/${USER}"
NEW_BASELINE=${STMP}/${USER}/FV3_RT/REGRESSION_TEST
# Overwrite default RUNDIR_ROOT if environment variable RUNDIR_ROOT is set
RUNDIR_ROOT=${RUNDIR_ROOT:-${PTMP}/${USER}/FV3_RT}/rt_$$
mkdir -p "${RUNDIR_ROOT}"
rm -rf "${PATHRT}/run_dir"
echo "Linking ${RUNDIR_ROOT} to ${PATHRT}/run_dir"
ln -s "${RUNDIR_ROOT}" "${PATHRT}/run_dir"
echo "Run regression test in: ${RUNDIR_ROOT}"
# BEFORE MOVING ANY FURTHER LETS CHECK THAT DISKNM/STMP/PTMP ALL EXIST
[[ -d ${DISKNM} ]] || die "ERROR: DISKNM: ${DISKNM} -- DOES NOT EXIST"
[[ -d ${STMP} ]] || die "ERROR: STMP: ${STMP} -- DOES NOT EXIST"
[[ -d ${PTMP} ]] || die "ERROR: PTMP: ${PTMP} -- DOES NOT EXIST"
update_rtconf
if [[ ${TESTS_FILE} =~ '35d' ]] || [[ ${TESTS_FILE} =~ 'weekly' ]]; then
TEST_35D=true
fi