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rt.sh
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rt.sh
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#!/bin/bash
set -eux
SECONDS=0
hostname
die() { echo "$@" >&2; exit 1; }
usage() {
set +x
echo
echo "Usage: $0 -c | -e | -h | -k | -w | -d | -l <file> | -m | -n <name> | -r "
echo
echo " -c create new baseline results"
echo " -e use ecFlow workflow manager"
echo " -h display this help"
echo " -k keep run directory after rt.sh is completed"
echo " -l runs test specified in <file>"
echo " -m compare against new baseline results"
echo " -n run single test <name>"
echo " -r use Rocoto workflow manager"
echo " -w for weekly_test, skip comparing baseline results"
echo " -d delete run direcotries that are not used by other tests"
echo
set -x
exit 1
}
[[ $# -eq 0 ]] && usage
rt_single() {
local compile_line=''
local run_line=''
while read -r line || [ "$line" ]; do
line="${line#"${line%%[![:space:]]*}"}"
[[ ${#line} == 0 ]] && continue
[[ $line == \#* ]] && continue
if [[ $line == COMPILE* ]] ; then
MACHINES=$(echo $line | cut -d'|' -f3 | sed -e 's/^ *//' -e 's/ *$//')
if [[ ${MACHINES} == '' ]]; then
compile_line=$line
elif [[ ${MACHINES} == -* ]]; then
[[ ${MACHINES} =~ ${MACHINE_ID} ]] || compile_line=$line
elif [[ ${MACHINES} == +* ]]; then
[[ ${MACHINES} =~ ${MACHINE_ID} ]] && compile_line=$line
fi
fi
if [[ $line =~ RUN ]]; then
tmp_test=$(echo $line | cut -d'|' -f2 | sed -e 's/^ *//' -e 's/ *$//')
if [[ $SINGLE_NAME == $tmp_test && $compile_line != '' ]]; then
echo $compile_line >$TESTS_FILE
dep_test=$(echo $line | grep -w $tmp_test | cut -d'|' -f5 | sed -e 's/^ *//' -e 's/ *$//')
if [[ $dep_test != '' ]]; then
dep_line=$(cat rt.conf | grep -w "$dep_test" | grep -v "$tmp_test")
dep_line="${dep_line#"${dep_line%%[![:space:]]*}"}"
echo $dep_line >>$TESTS_FILE
fi
echo $line >>$TESTS_FILE
break
fi
fi
done <'rt.conf'
if [[ ! -f $TESTS_FILE ]]; then
echo "$SINGLE_NAME does not exist or cannot be run on $MACHINE_ID"
exit 1
fi
}
rt_35d() {
if [[ $TEST_NAME =~ '35d' ]] ; then
local sy=$(echo ${DATE_35D} | cut -c 1-4)
local sm=$(echo ${DATE_35D} | cut -c 5-6)
local new_test_name="tests/${TEST_NAME}_${DATE_35D}"
rm -f $new_test_name
cp tests/$TEST_NAME $new_test_name
sed -i -e "s/\(export SYEAR\)/\1=\"$sy\"/" $new_test_name
sed -i -e "s/\(export SMONTH\)/\1=\"$sm\"/" $new_test_name
TEST_NAME=${new_test_name#tests/}
fi
}
rt_trap() {
[[ ${ROCOTO:-false} == true ]] && rocoto_kill
[[ ${ECFLOW:-false} == true ]] && ecflow_kill
cleanup
}
cleanup() {
rm -rf ${LOCKDIR}
[[ ${ECFLOW:-false} == true ]] && ecflow_stop
trap 0
exit
}
trap '{ echo "rt.sh interrupted"; rt_trap ; }' INT
trap '{ echo "rt.sh quit"; rt_trap ; }' QUIT
trap '{ echo "rt.sh terminated"; rt_trap ; }' TERM
trap '{ echo "rt.sh error on line $LINENO"; cleanup ; }' ERR
trap '{ echo "rt.sh finished"; cleanup ; }' EXIT
# PATHRT - Path to regression tests directory
readonly PATHRT="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd -P )"
cd ${PATHRT}
# PATHTR - Path to nmmb trunk directory
readonly PATHTR=$( cd ${PATHRT}/.. && pwd )
# make sure only one instance of rt.sh is running
readonly LOCKDIR="${PATHRT}"/lock
if mkdir "${LOCKDIR}" ; then
echo $(hostname) $$ > "${LOCKDIR}/PID"
else
echo "Only one instance of rt.sh can be running at a time"
exit 1
fi
# Default compiler "intel"
export RT_COMPILER=${RT_COMPILER:-intel}
source detect_machine.sh # Note: this does not set ACCNR. The "if" block below does.
source rt_utils.sh
source module-setup.sh
if [[ $MACHINE_ID = wcoss2.* ]]; then
#module use /usrx/local/dev/emc_rocoto/modulefiles
#module load ruby/2.5.1 rocoto/1.3.0rc2
#ROCOTORUN=$(which rocotorun)
#ROCOTOSTAT=$(which rocotostat)
#ROCOTOCOMPLETE=$(which rocotocomplete)
#ROCOTO_SCHEDULER=lsf
module load ecflow/5.6.0.6
module load gcc/10.3.0 python/3.8.6
ECFLOW_START=${ECF_ROOT}/scripts/server_check.sh
export ECF_OUTPUTDIR=${PATHRT}/ecf_outputdir
export ECF_COMDIR=${PATHRT}/ecf_comdir
rm -rf ${ECF_OUTPUTDIR} ${ECF_COMDIR}
mkdir -p ${ECF_OUTPUTDIR}
mkdir -p ${ECF_COMDIR}
export colonifnco=":output" # hack
DISKNM=/lfs/h2/emc/nems/noscrub/emc.nems/RT
QUEUE=dev
COMPILE_QUEUE=dev
PARTITION=
ACCNR="${ACCNR:-GFS-DEV}"
STMP=/lfs/h2/emc/ptmp
PTMP=/lfs/h2/emc/ptmp
SCHEDULER=pbs
cp fv3_conf/fv3_qsub.IN_wcoss2 fv3_conf/fv3_qsub.IN
cp fv3_conf/compile_qsub.IN_wcoss2 fv3_conf/compile_qsub.IN
elif [[ $MACHINE_ID = acorn.* ]]; then
module load ecflow/5.6.0.6
module load gcc/10.3.0 python/3.8.6
ECFLOW_START=${ECF_ROOT}/scripts/server_check.sh
export ECF_OUTPUTDIR=${PATHRT}/ecf_outputdir
export ECF_COMDIR=${PATHRT}/ecf_comdir
rm -rf ${ECF_OUTPUTDIR} ${ECF_COMDIR}
mkdir -p ${ECF_OUTPUTDIR}
mkdir -p ${ECF_COMDIR}
export colonifnco=":output" # hack
DISKNM=/lfs/h1/emc/nems/noscrub/emc.nems/RT
QUEUE=dev
COMPILE_QUEUE=dev
PARTITION=
ACCNR="${ACCNR:-GFS-DEV}"
STMP=/lfs/h2/emc/ptmp
PTMP=/lfs/h2/emc/ptmp
SCHEDULER=pbs
cp fv3_conf/fv3_qsub.IN_wcoss2 fv3_conf/fv3_qsub.IN
cp fv3_conf/compile_qsub.IN_wcoss2 fv3_conf/compile_qsub.IN
elif [[ $MACHINE_ID = gaea.* ]]; then
export PATH=/lustre/f2/pdata/esrl/gsd/contrib/miniconda3/4.8.3/envs/ufs-weather-model/bin:/lustre/f2/pdata/esrl/gsd/contrib/miniconda3/4.8.3/bin:$PATH
export PYTHONPATH=/lustre/f2/pdata/esrl/gsd/contrib/miniconda3/4.8.3/envs/ufs-weather-model/lib/python3.8/site-packages:/lustre/f2/pdata/esrl/gsd/contrib/miniconda3/4.8.3/lib/python3.8/site-packages
ECFLOW_START=/lustre/f2/pdata/esrl/gsd/contrib/miniconda3/4.8.3/envs/ufs-weather-model/bin/ecflow_start.sh
ECF_PORT=$(( $(id -u) + 1500 ))
DISKNM=/lustre/f2/pdata/ncep_shared/emc.nemspara/RT
QUEUE=normal
COMPILE_QUEUE=normal
# ACCNR="${ACCNR:-cmp}"
PARTITION=c4
STMP=/lustre/f2/scratch
PTMP=/lustre/f2/scratch
SCHEDULER=slurm
cp fv3_conf/fv3_slurm.IN_gaea fv3_conf/fv3_slurm.IN
cp fv3_conf/compile_slurm.IN_gaea fv3_conf/compile_slurm.IN
elif [[ $MACHINE_ID = hera.* ]]; then
module load rocoto
ROCOTORUN=$(which rocotorun)
ROCOTOSTAT=$(which rocotostat)
ROCOTOCOMPLETE=$(which rocotocomplete)
ROCOTO_SCHEDULER=slurm
PYTHONHOME=/scratch1/NCEPDEV/nems/emc.nemspara/soft/miniconda3_new_20210629
export PATH=$PYTHONHOME/bin:$PATH
export PYTHONPATH=$PYTHONHOME/lib/python3.7/site-packages
module load ecflow
ECFLOW_START=ecflow_start.sh
QUEUE=batch
COMPILE_QUEUE=batch
#ACCNR="${ACCNR:-fv3-cpu}
PARTITION=
dprefix=/scratch1/NCEPDEV
DISKNM=$dprefix/nems/emc.nemspara/RT
STMP=$dprefix/stmp4
PTMP=$dprefix/stmp2
SCHEDULER=slurm
cp fv3_conf/fv3_slurm.IN_hera fv3_conf/fv3_slurm.IN
cp fv3_conf/compile_slurm.IN_hera fv3_conf/compile_slurm.IN
elif [[ $MACHINE_ID = orion.* ]]; then
module load gcc/8.3.0
module load contrib rocoto/1.3.1
ROCOTORUN=$(which rocotorun)
ROCOTOSTAT=$(which rocotostat)
ROCOTOCOMPLETE=$(which rocotocomplete)
export PATH=/work/noaa/nems/emc.nemspara/soft/miniconda3/bin:$PATH
export PYTHONPATH=/work/noaa/nems/emc.nemspara/soft/miniconda3/lib/python3.8/site-packages
ECFLOW_START=/work/noaa/nems/emc.nemspara/soft/miniconda3/bin/ecflow_start.sh
ECF_PORT=$(( $(id -u) + 1500 ))
QUEUE=batch
COMPILE_QUEUE=batch
PARTITION=orion
dprefix=/work/noaa/stmp/${USER}
DISKNM=/work/noaa/nems/emc.nemspara/RT
STMP=$dprefix/stmp
PTMP=$dprefix/stmp
SCHEDULER=slurm
cp fv3_conf/fv3_slurm.IN_orion fv3_conf/fv3_slurm.IN
cp fv3_conf/compile_slurm.IN_orion fv3_conf/compile_slurm.IN
elif [[ $MACHINE_ID = jet.* ]]; then
module load rocoto/1.3.2
ROCOTORUN=$(which rocotorun)
ROCOTOSTAT=$(which rocotostat)
ROCOTOCOMPLETE=$(which rocotocomplete)
ROCOTO_SCHEDULER=slurm
export PATH=/lfs4/HFIP/hfv3gfs/software/miniconda3/4.8.3/envs/ufs-weather-model/bin:/lfs4/HFIP/hfv3gfs/software/miniconda3/4.8.3/bin:$PATH
export PYTHONPATH=/lfs4/HFIP/hfv3gfs/software/miniconda3/4.8.3/envs/ufs-weather-model/lib/python3.8/site-packages:/lfs4/HFIP/hfv3gfs/software/miniconda3/4.8.3/lib/python3.8/site-packages
module load ecflow
ECFLOW_START=/apps/ecflow/5.5.3/bin/ecflow_start.sh
QUEUE=batch
COMPILE_QUEUE=batch
ACCNR="${ACCNR:-h-nems}"
PARTITION=xjet
DISKNM=/lfs4/HFIP/h-nems/emc.nemspara/RT
dprefix=${dprefix:-/lfs4/HFIP/$ACCNR/$USER}
STMP=${STMP:-$dprefix/RT_BASELINE}
PTMP=${PTMP:-$dprefix/RT_RUNDIRS}
SCHEDULER=slurm
cp fv3_conf/fv3_slurm.IN_jet fv3_conf/fv3_slurm.IN
cp fv3_conf/compile_slurm.IN_jet fv3_conf/compile_slurm.IN
elif [[ $MACHINE_ID = s4.* ]]; then
module load rocoto/1.3.2
module load ecflow/5.6.0
module load miniconda/3.8-s4
ROCOTORUN=$(which rocotorun)
ROCOTOSTAT=$(which rocotostat)
ROCOTOCOMPLETE=$(which rocotocomplete)
ROCOTO_SCHEDULER=slurm
ECFLOW_START=/opt/ecflow/5.6.0/bin/ecflow_start.sh
ECF_PORT=$(( $(id -u) + 1500 ))
QUEUE=s4
COMPILE_QUEUE=s4
ACCNR="${ACCNR:-star}"
PARTITION=s4
dprefix=/data/prod
DISKNM=$dprefix/emc.nemspara/RT
STMP=/scratch/short/users
PTMP=/scratch/users
SCHEDULER=slurm
cp fv3_conf/fv3_slurm.IN_s4 fv3_conf/fv3_slurm.IN
cp fv3_conf/compile_slurm.IN_s4 fv3_conf/compile_slurm.IN
elif [[ $MACHINE_ID = cheyenne.* ]]; then
export PATH=/glade/p/ral/jntp/tools/miniconda3/4.8.3/envs/ufs-weather-model/bin:/glade/p/ral/jntp/tools/miniconda3/4.8.3/bin:$PATH
export PYTHONPATH=/glade/p/ral/jntp/tools/miniconda3/4.8.3/envs/ufs-weather-model/lib/python3.8/site-packages:/glade/p/ral/jntp/tools/miniconda3/4.8.3/lib/python3.8/site-packages
ECFLOW_START=/glade/p/ral/jntp/tools/miniconda3/4.8.3/envs/ufs-weather-model/bin/ecflow_start.sh
ECF_PORT=$(( $(id -u) + 1500 ))
QUEUE=regular
COMPILE_QUEUE=regular
PARTITION=
dprefix=/glade/scratch
DISKNM=/glade/scratch/epicufsrt/GMTB/ufs-weather-model/RT
STMP=$dprefix
PTMP=$dprefix
SCHEDULER=pbs
cp fv3_conf/fv3_qsub.IN_cheyenne fv3_conf/fv3_qsub.IN
cp fv3_conf/compile_qsub.IN_cheyenne fv3_conf/compile_qsub.IN
elif [[ $MACHINE_ID = stampede.* ]]; then
export PYTHONPATH=
ECFLOW_START=
QUEUE=skx-normal
COMPILE_QUEUE=skx-dev
PARTITION=
ACCNR="${ACCNR:-TG-EES200015}"
dprefix=$SCRATCH/ufs-weather-model/run
DISKNM=/work2/07736/minsukji/stampede2/ufs-weather-model/RT
STMP=$dprefix
PTMP=$dprefix
SCHEDULER=slurm
MPIEXEC=ibrun
MPIEXECOPTS=
cp fv3_conf/fv3_slurm.IN_stampede fv3_conf/fv3_slurm.IN
elif [[ $MACHINE_ID = expanse.* ]]; then
export PYTHONPATH=
ECFLOW_START=
QUEUE=compute
COMPILE_QUEUE=shared
PARTITION=
ACCNR="${ACCNR:-TG-EES200015}"
dprefix=/expanse/lustre/scratch/$USER/temp_project/run
DISKNM=/expanse/lustre/scratch/domh/temp_project/RT
STMP=$dprefix
PTMP=$dprefix
SCHEDULER=slurm
cp fv3_conf/fv3_slurm.IN_expanse fv3_conf/fv3_slurm.IN
else
die "Unknown machine ID, please edit detect_machine.sh file"
fi
# If account is unspecified, assume the machine has a "nems"
# accounting code.
export ACCNR="${ACCNR:-nems}"
# Display the machine and account using the format detect_machine.sh used:
echo "Machine: " $MACHINE_ID " Account: " $ACCNR
mkdir -p ${STMP}/${USER}
NEW_BASELINE=${STMP}/${USER}/FV3_RT/REGRESSION_TEST_${RT_COMPILER^^}
# Overwrite default RUNDIR_ROOT if environment variable RUNDIR_ROOT is set
RUNDIR_ROOT=${RUNDIR_ROOT:-${PTMP}/${USER}/FV3_RT}/rt_$$
mkdir -p ${RUNDIR_ROOT}
CREATE_BASELINE=false
ROCOTO=false
ECFLOW=false
KEEP_RUNDIR=false
SINGLE_NAME=''
TEST_35D=false
export skip_check_results=false
export delete_rundir=false
TESTS_FILE='rt.conf'
while getopts ":cl:mn:dwkreh" opt; do
case $opt in
c)
CREATE_BASELINE=true
;;
l)
TESTS_FILE=$OPTARG
;;
m)
# redefine RTPWD to point to newly created baseline outputs
RTPWD=${NEW_BASELINE}
;;
n)
SINGLE_NAME=$OPTARG
TESTS_FILE='rt.conf.single'
rm -f $TESTS_FILE
;;
d)
export delete_rundir=true
awk -F "|" '{print $5}' rt.conf | grep "\S" > keep_tests.tmp
;;
w)
export skip_check_results=true
;;
k)
KEEP_RUNDIR=true
;;
r)
ROCOTO=true
ECFLOW=false
;;
e)
ECFLOW=true
ROCOTO=false
;;
h)
usage
;;
\?)
usage
die "Invalid option: -$OPTARG"
;;
:)
usage
die "Option -$OPTARG requires an argument."
;;
esac
done
if [[ $SINGLE_NAME != '' ]]; then
rt_single
fi
if [[ $TESTS_FILE =~ '35d' ]] || [[ $TESTS_FILE =~ 'weekly' ]]; then
TEST_35D=true
fi
BL_DATE=20220829
RTPWD=${RTPWD:-$DISKNM/NEMSfv3gfs/develop-${BL_DATE}/${RT_COMPILER^^}}
INPUTDATA_ROOT=${INPUTDATA_ROOT:-$DISKNM/NEMSfv3gfs/input-data-20220414}
INPUTDATA_ROOT_WW3=${INPUTDATA_ROOT}/WW3_input_data_20220624
INPUTDATA_ROOT_BMIC=${INPUTDATA_ROOT_BMIC:-$DISKNM/NEMSfv3gfs/BM_IC-20220207}
shift $((OPTIND-1))
[[ $# -gt 1 ]] && usage
if [[ $CREATE_BASELINE == true ]]; then
#
# prepare new regression test directory
#
rm -rf "${NEW_BASELINE}"
mkdir -p "${NEW_BASELINE}"
fi
if [[ $skip_check_results == true ]]; then
REGRESSIONTEST_LOG=${PATHRT}/RegressionTests_weekly_$MACHINE_ID.log
else
REGRESSIONTEST_LOG=${PATHRT}/RegressionTests_$MACHINE_ID.log
fi
date > ${REGRESSIONTEST_LOG}
echo "Start Regression test" >> ${REGRESSIONTEST_LOG}
echo >> ${REGRESSIONTEST_LOG}
source default_vars.sh
JOB_NR=0
TEST_NR=0
COMPILE_NR=0
rm -f fail_test* fail_compile*
export LOG_DIR=${PATHRT}/log_$MACHINE_ID
rm -rf ${LOG_DIR}
mkdir ${LOG_DIR}
if [[ $ROCOTO == true ]]; then
ROCOTO_XML=${PATHRT}/rocoto_workflow.xml
ROCOTO_STATE=${PATHRT}/rocoto_workflow.state
ROCOTO_DB=${PATHRT}/rocoto_workflow.db
rm -f $ROCOTO_XML $ROCOTO_DB $ROCOTO_STATE *_lock.db
if [[ $MACHINE_ID = wcoss2.* || $MACHINE_ID = acorn.* ]]; then
QUEUE=dev
COMPILE_QUEUE=dev
ROCOTO_SCHEDULER=pbs
elif [[ $MACHINE_ID = hera.* ]]; then
QUEUE=batch
COMPILE_QUEUE=batch
ROCOTO_SCHEDULER=slurm
elif [[ $MACHINE_ID = orion.* ]]; then
QUEUE=batch
COMPILE_QUEUE=batch
ROCOTO_SCHEDULER=slurm
elif [[ $MACHINE_ID = s4.* ]]; then
QUEUE=s4
COMPILE_QUEUE=s4
ROCOTO_SCHEDULER=slurm
elif [[ $MACHINE_ID = jet.* ]]; then
QUEUE=batch
COMPILE_QUEUE=batch
ROCOTO_SCHEDULER=slurm
else
die "Rocoto is not supported on this machine $MACHINE_ID"
fi
cat << EOF > $ROCOTO_XML
<?xml version="1.0"?>
<!DOCTYPE workflow
[
<!ENTITY PATHRT "${PATHRT}">
<!ENTITY LOG "${LOG_DIR}">
<!ENTITY PATHTR "${PATHTR}">
<!ENTITY RTPWD "${RTPWD}">
<!ENTITY INPUTDATA_ROOT "${INPUTDATA_ROOT}">
<!ENTITY INPUTDATA_ROOT_WW3 "${INPUTDATA_ROOT_WW3}">
<!ENTITY INPUTDATA_ROOT_BMIC "${INPUTDATA_ROOT_BMIC}">
<!ENTITY RUNDIR_ROOT "${RUNDIR_ROOT}">
<!ENTITY NEW_BASELINE "${NEW_BASELINE}">
]>
<workflow realtime="F" scheduler="${ROCOTO_SCHEDULER}" taskthrottle="20">
<cycledef>197001010000 197001010000 01:00:00</cycledef>
<log>&LOG;/workflow.log</log>
EOF
fi
if [[ $ECFLOW == true ]]; then
# Default maximum number of compile and run jobs
MAX_BUILDS=10
MAX_JOBS=30
# Default number of tries to run jobs - on wcoss, no error tolerance
ECF_TRIES=2
if [[ $MACHINE_ID = wcoss* ]]; then
ECF_TRIES=1
fi
# Reduce maximum number of compile jobs on jet.intel and s4.intel because of licensing issues
if [[ $MACHINE_ID = jet.intel ]]; then
MAX_BUILDS=5
elif [[ $MACHINE_ID = s4.intel ]]; then
MAX_BUILDS=1
fi
if [[ $MACHINE_ID = hera.* ]] && [[ ! $HOSTNAME = hecflow* ]]; then
echo "ERROR: To use ECFlow on Hera we must be logged into 'hecflow01' login node."
exit 1
fi
ECFLOW_RUN=${PATHRT}/ecflow_run
ECFLOW_SUITE=regtest_$$
rm -rf ${ECFLOW_RUN}
mkdir -p ${ECFLOW_RUN}/${ECFLOW_SUITE}
cp head.h tail.h ${ECFLOW_RUN}
cat << EOF > ${ECFLOW_RUN}/${ECFLOW_SUITE}.def
suite ${ECFLOW_SUITE}
edit ECF_HOME '${ECFLOW_RUN}'
edit ECF_INCLUDE '${ECFLOW_RUN}'
edit ECF_KILL_CMD kill -15 %ECF_RID% > %ECF_JOB%.kill 2>&1
edit ECF_TRIES ${ECF_TRIES}
label src_dir '${PATHTR}'
label run_dir '${RUNDIR_ROOT}'
limit max_builds ${MAX_BUILDS}
limit max_jobs ${MAX_JOBS}
EOF
if [[ $MACHINE_ID = wcoss2.* || $MACHINE_ID = acorn.* ]]; then
QUEUE=dev
elif [[ $MACHINE_ID = hera.* ]]; then
QUEUE=batch
elif [[ $MACHINE_ID = orion.* ]]; then
QUEUE=batch
elif [[ $MACHINE_ID = jet.* ]]; then
QUEUE=batch
elif [[ $MACHINE_ID = s4.* ]]; then
QUEUE=s4
elif [[ $MACHINE_ID = gaea.* ]]; then
QUEUE=normal
elif [[ $MACHINE_ID = cheyenne.* ]]; then
QUEUE=regular
else
die "ecFlow is not supported on this machine $MACHINE_ID"
fi
else
if [[ $MACHINE_ID = hera.* ]] && [[ $HOSTNAME = hecflow* ]]; then
echo "ERROR: To run without using ECFlow on Hera, please do not use ecflow node."
exit 1
fi
fi
##
## read rt.conf and then either execute the test script directly or create
## workflow description file
##
new_compile=false
in_metatask=false
[[ -f $TESTS_FILE ]] || die "$TESTS_FILE does not exist"
while read -r line || [ "$line" ]; do
line="${line#"${line%%[![:space:]]*}"}"
[[ ${#line} == 0 ]] && continue
[[ $line == \#* ]] && continue
JOB_NR=$( printf '%03d' $(( 10#$JOB_NR + 1 )) )
if [[ $line == COMPILE* ]] ; then
MAKE_OPT=$(echo $line | cut -d'|' -f2 | sed -e 's/^ *//' -e 's/ *$//')
MACHINES=$(echo $line | cut -d'|' -f3 | sed -e 's/^ *//' -e 's/ *$//')
CB=$( echo $line | cut -d'|' -f4)
[[ $CREATE_BASELINE == true && $CB != *fv3* ]] && continue
if [[ ${MACHINES} != '' ]]; then
if [[ ${MACHINES} == -* ]]; then
[[ ${MACHINES} =~ ${MACHINE_ID} ]] && continue
elif [[ ${MACHINES} == +* ]]; then
[[ ${MACHINES} =~ ${MACHINE_ID} ]] || continue
else
echo "MACHINES=|${MACHINES}|"
die "MACHINES spec must be either an empty string or start with either '+' or '-'"
fi
fi
export COMPILE_NR=$( printf '%03d' $(( 10#$COMPILE_NR + 1 )) )
cat << EOF > ${RUNDIR_ROOT}/compile_${COMPILE_NR}.env
export JOB_NR=${JOB_NR}
export COMPILE_NR=${COMPILE_NR}
export MACHINE_ID=${MACHINE_ID}
export RT_COMPILER=${RT_COMPILER}
export PATHRT=${PATHRT}
export PATHTR=${PATHTR}
export SCHEDULER=${SCHEDULER}
export ACCNR=${ACCNR}
export QUEUE=${COMPILE_QUEUE}
export PARTITION=${PARTITION}
export ROCOTO=${ROCOTO}
export ECFLOW=${ECFLOW}
export REGRESSIONTEST_LOG=${REGRESSIONTEST_LOG}
export LOG_DIR=${LOG_DIR}
EOF
if [[ $ROCOTO == true ]]; then
rocoto_create_compile_task
elif [[ $ECFLOW == true ]]; then
ecflow_create_compile_task
else
./run_compile.sh ${PATHRT} ${RUNDIR_ROOT} "${MAKE_OPT}" ${COMPILE_NR} > ${LOG_DIR}/compile_${COMPILE_NR}.log 2>&1
fi
RT_SUFFIX=""
BL_SUFFIX=""
continue
elif [[ $line == RUN* ]] ; then
TEST_NAME=$(echo $line | cut -d'|' -f2 | sed -e 's/^ *//' -e 's/ *$//')
MACHINES=$( echo $line | cut -d'|' -f3 | sed -e 's/^ *//' -e 's/ *$//')
CB=$( echo $line | cut -d'|' -f4)
DEP_RUN=$( echo $line | cut -d'|' -f5 | sed -e 's/^ *//' -e 's/ *$//')
DATE_35D=$( echo $line | cut -d'|' -f6 | sed -e 's/^ *//' -e 's/ *$//')
[[ -e "tests/$TEST_NAME" ]] || die "run test file tests/$TEST_NAME does not exist"
[[ $CREATE_BASELINE == true && $CB != *fv3* ]] && continue
if [[ ${MACHINES} != '' ]]; then
if [[ ${MACHINES} == -* ]]; then
[[ ${MACHINES} =~ ${MACHINE_ID} ]] && continue
elif [[ ${MACHINES} == +* ]]; then
[[ ${MACHINES} =~ ${MACHINE_ID} ]] || continue
else
echo "MACHINES=|${MACHINES}|"
die "MACHINES spec must be either an empty string or start with either '+' or '-'"
fi
fi
# 35 day tests
[[ $TEST_35D == true ]] && rt_35d
# Avoid uninitialized RT_SUFFIX/BL_SUFFIX (see definition above)
RT_SUFFIX=${RT_SUFFIX:-""}
BL_SUFFIX=${BL_SUFFIX:-""}
if [[ $ROCOTO == true && $new_compile == true ]]; then
new_compile=false
in_metatask=true
cat << EOF >> $ROCOTO_XML
<metatask name="compile_${COMPILE_NR}_tasks"><var name="zero">0</var>
EOF
fi
TEST_NR=$( printf '%03d' $(( 10#$TEST_NR + 1 )) )
(
source ${PATHRT}/tests/$TEST_NAME
TPN=$(( TPN / THRD ))
NODES=$(( TASKS / TPN ))
if (( NODES * TPN < TASKS )); then
NODES=$(( NODES + 1 ))
fi
cat << EOF > ${RUNDIR_ROOT}/run_test_${TEST_NR}.env
export JOB_NR=${JOB_NR}
export MACHINE_ID=${MACHINE_ID}
export RT_COMPILER=${RT_COMPILER}
export RTPWD=${RTPWD}
export INPUTDATA_ROOT=${INPUTDATA_ROOT}
export INPUTDATA_ROOT_WW3=${INPUTDATA_ROOT_WW3}
export INPUTDATA_ROOT_BMIC=${INPUTDATA_ROOT_BMIC}
export PATHRT=${PATHRT}
export PATHTR=${PATHTR}
export NEW_BASELINE=${NEW_BASELINE}
export CREATE_BASELINE=${CREATE_BASELINE}
export RT_SUFFIX=${RT_SUFFIX}
export BL_SUFFIX=${BL_SUFFIX}
export SCHEDULER=${SCHEDULER}
export ACCNR=${ACCNR}
export QUEUE=${QUEUE}
export PARTITION=${PARTITION}
export ROCOTO=${ROCOTO}
export ECFLOW=${ECFLOW}
export REGRESSIONTEST_LOG=${REGRESSIONTEST_LOG}
export LOG_DIR=${LOG_DIR}
export DEP_RUN=${DEP_RUN}
export skip_check_results=${skip_check_results}
export delete_rundir=${delete_rundir}
EOF
if [[ $MACHINE_ID = jet.* ]]; then
cat << EOF >> ${RUNDIR_ROOT}/run_test_${TEST_NR}.env
export PATH=/lfs4/HFIP/hfv3gfs/software/miniconda3/4.8.3/envs/ufs-weather-model/bin:/lfs4/HFIP/hfv3gfs/software/miniconda3/4.8.3/bin:$PATH
export PYTHONPATH=/lfs4/HFIP/hfv3gfs/software/miniconda3/4.8.3/envs/ufs-weather-model/lib/python3.8/site-packages:/lfs4/HFIP/hfv3gfs/software/miniconda3/4.8.3/lib/python3.8/site-packages
EOF
fi
if [[ $ROCOTO == true ]]; then
rocoto_create_run_task
elif [[ $ECFLOW == true ]]; then
ecflow_create_run_task
else
./run_test.sh ${PATHRT} ${RUNDIR_ROOT} ${TEST_NAME} ${TEST_NR} ${COMPILE_NR} > ${LOG_DIR}/run_${TEST_NAME}${RT_SUFFIX}.log 2>&1
fi
)
continue
else
die "Unknown command $line"
fi
done < $TESTS_FILE
##
## run regression test workflow (currently Rocoto or ecFlow are supported)
##
if [[ $ROCOTO == true ]]; then
if [[ $in_metatask == true ]]; then
echo " </metatask>" >> $ROCOTO_XML
fi
echo "</workflow>" >> $ROCOTO_XML
# run rocoto workflow until done
rocoto_run
fi
if [[ $ECFLOW == true ]]; then
echo "endsuite" >> ${ECFLOW_RUN}/${ECFLOW_SUITE}.def
# run ecflow workflow until done
ecflow_run
fi
##
## regression test is either failed or successful
##
set +e
cat ${LOG_DIR}/compile_*_time.log >> ${REGRESSIONTEST_LOG}
cat ${LOG_DIR}/rt_*.log >> ${REGRESSIONTEST_LOG}
FILES="fail_test_* fail_compile_*"
for f in $FILES; do
if [[ -f "$f" ]]; then
cat "$f" >> fail_test
fi
done
if [[ -e fail_test ]]; then
echo "FAILED TESTS: "
echo "FAILED TESTS: " >> ${REGRESSIONTEST_LOG}
while read -r failed_test_name
do
echo "Test ${failed_test_name} failed "
echo "Test ${failed_test_name} failed " >> ${REGRESSIONTEST_LOG}
done < fail_test
echo ; echo REGRESSION TEST FAILED
(echo ; echo REGRESSION TEST FAILED) >> ${REGRESSIONTEST_LOG}
else
echo ; echo REGRESSION TEST WAS SUCCESSFUL
(echo ; echo REGRESSION TEST WAS SUCCESSFUL) >> ${REGRESSIONTEST_LOG}
rm -f fv3_*.x fv3_*.exe modules.fv3_* keep_tests.tmp
[[ ${KEEP_RUNDIR} == false ]] && rm -rf ${RUNDIR_ROOT}
[[ ${ROCOTO} == true ]] && rm -f ${ROCOTO_XML} ${ROCOTO_DB} ${ROCOTO_STATE} *_lock.db
[[ ${TEST_35D} == true ]] && rm -f tests/cpld_bmark*_20*
[[ ${SINGLE_NAME} != '' ]] && rm -f rt.conf.single
fi
date >> ${REGRESSIONTEST_LOG}
elapsed_time=$( printf '%02dh:%02dm:%02ds\n' $((SECONDS%86400/3600)) $((SECONDS%3600/60)) $((SECONDS%60)) )
echo "Elapsed time: ${elapsed_time}. Have a nice day!" >> ${REGRESSIONTEST_LOG}
echo "Elapsed time: ${elapsed_time}. Have a nice day!"