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  1. panvc3 panvc3 Public

    Variant calling using a pan-genomic reference, version 3

    C++ 1

  2. vcf2multialign vcf2multialign Public

    Create a set of reference-guided multiple-aligned haplotypes or founder sequences from a variant call file and a reference sequence.

    C++ 4 1

  3. founder-sequences founder-sequences Public

    Create a set of founder sequences from a set of multiple-aligned sequences.

    C++ 5 1

  4. compact-superstring compact-superstring Public

    Use a greedy approximation algorithm to find the shortest common superstring of given strings.

    C++ 2