Fast alignment of genomic sequences using Boyer-Moore with linear time construction of indexes using Z algorithm.
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Updated
Sep 24, 2019 - C++
Fast alignment of genomic sequences using Boyer-Moore with linear time construction of indexes using Z algorithm.
All you need to save time :p
Here we have discussed various string algorithms, including the popular pattern matching algorithms like KMP, Z, Rabin Karp, etc as a part of Design and Analysis of Algorithms course under the guidance of Dr. Kapil Ahuja
Get Started with DNA Sequencing working with .FastQ and .FastA file formats and performing Pattern Matching Algorithms (Exact & Approximate).
Common Data Structures And Algorithms Implemented In C++. FOR LEARNING PURPOSES ONLY
Deals with the Algorithms along with the explanation.
Algorithms useful for CS graduates
Here I have discussed various string algorithms, including the popular pattern matching algorithms
Advance algorithm implementations
Implementation of LZSS, a lossless data compression algorithm by using Z algorithm, Huffman and Elias encoding method.
Gusfield's Z-algorithm is used as a pre-processing step on the pattern as input to string pattern-matching algorithms like KMP and Boyer-Moore.
A linear time string preprocessing algorithm in JavaScript. Can be used for linear or even sub-linear time pattern matching if used with other algorithms (such as Boyer-Moore with Galil's optimisation)
The Z Algorithm is a linear-time string matching algorithm used to find all the occurrences of a pattern string in a text string. It uses a preprocessing step to create a Z array, which stores the length of the longest common prefix of the text and a suffix starting from a specific position.
🔎 Comparison of string pattern searching algorithms.
Problems seen and solved on the https://codeforces.com/ website
This repository explores the Z-algorithm, a linear-time string searching algorithm. We implement the Z-algorithm for practical applications in text summarization and text search with highlighting.
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