An example script of how to download WGBS data from SLIMS, check md5sums, merge lanes, and submit a project to CpG_Me
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Updated
Feb 28, 2020 - Shell
An example script of how to download WGBS data from SLIMS, check md5sums, merge lanes, and submit a project to CpG_Me
Analysis of DNA methylation and gene expression for thioredoxin system genes in Wilson disease
Analyses for the manuscript "Prenatal PCB exposure alters a shared neurodevelopmental DNA methylation profile in mouse placenta and fetal brain".
Pipeline for BS-Seq data based on snakemake
Analysis scripts for identification and visualization of Wilson disease-associated DNA methylation changes in human liver and blood
mix of python, bash and R functions, scripts and notebooks to benchmark the use of methylation as proxy to infer TF binding
A Bioconductor ExperimentHub data package for flow sorted purified whole blood cell types measured using DNA methylation on WGBS platform from BLUEPRINT
Analysis of DNA methylation data by whole-genome bisulfite sequencing in umbilical cord blood from ASD and TD subjects in the MARBLES and EARLI studies
Using Snakemake to implement ENCODE WGBS pipeline
An R package for weighted region comethylation network analysis
This repository contains data and functions related to computational epigenomics data analysis.
TFregulomeR reveals transcription factors’ context-specific features and functions
R package to impute methylation within WGBS using machine learning
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