A tool for 2D tomographic images clustering

ImageJ/Fiji macro that crops any given image stack without having to load it into memory first.

Visualization of Tomographic Projection/Reconstruction Operations

Image processing software for the CERIC beamtime proposal 20217193

ImageJ UI examples calling the MuMassCalculator library

This repository includes necessary files for creation and processing of projections, aquiered by the RaspCT.

Collection of scripts for reducing the size of images for tomography

MemBrain : Membrane segmentation in 3D for cryo-ET (by @teamtomo)

Code used to analyze adaptive decoupling in insects.

A framework for physics-based rendering of underwater images using Mitsuba 0.6 This work is part of simulation work done in[1]. [1] Adi Vainiger, Yoav Y. Schechner, Tali Treibitz, Aviad Avni, and David S. Timor, "Optical wide-field tomography of sediment resuspension," Opt. Express 27, A766-A778 (2019) https://opg.optica.org/oe/abstract.cfm?uri=o

Relaxed multi-levelset segmentation package, with tomographically consistent refinement.

Jupyter notebooks to look at and fiddle with the tomographic scans we performed for http:https://nccr-planets.ch/

X-ray holo-tomography reconstruction code

Larix - a collection of image processing tools

Driving HT-HEDM experiment with Bluesky+Ophyd as backend and Jupyter as the front-end.

This project was submitted as a requirement for this course. The course was administered in Spring 2020 in Tel-Aviv University - School of Mathematical Sciences

Converts any image stack to a Stratovan Checkpoint file (*.ckpt) keeping specimen names and voxel sizes.

Code for multi-channel tomographic reconstruction with Multi-Channel DART (MC-DART)

Computational tools to solve two-photon photo-acoustic tomography problems using FEniCS

PFAST: A High Performance Software Package for Transmission and Reflection Seismic Traveltime Tomography