MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation
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Updated
Jun 22, 2023 - Shell
MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation
Structural variant benchmark of challenging medically relevant genes
nRex: Germline and somatic single-nucleotide, short indel and structural variant calling
Some workflows I wrote for my phd projects
De novo genome assembly, phylogenetics, comparative genomics analysis, and functional variant annotation
A workflow for using SpeedSeq to align and call SVs from WGS data
Guide to installing, using, and interpreting structural variant finders. Includes example scripts for running tools on UCLA's Hoffman2 and a description of how to use the machine learning combination method FusorSV.
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