Analysis scripts for the manuscript: "Spatial transcriptomics unveils ZBTB11 as a regulator of cardiomyocyte degeneration in arrhythmogenic cardiomyopathy".
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Updated
Jan 27, 2022 - R
Analysis scripts for the manuscript: "Spatial transcriptomics unveils ZBTB11 as a regulator of cardiomyocyte degeneration in arrhythmogenic cardiomyopathy".
This is the source code for implementing hyperedge representations via hypergraph wavelets.
A snakemake pipeline to perform cell segmentation on MERFISH spatial transcriptomics data.
Spatial transcriptomics datasets from 10XGenomices (spatial-gene-expression datasets)
Containerized workflow for single cell detection of loss of Y chromosome and other mosaic chromosomal alterations in chronic kidney disease
Leveraging cell-cell similarity for high-performance spatial and temporal cellular mappings from gene expression data (Cell Patterns, 2023)
graph-based cell type annotation toolkit for single-cell RNA-seq, ATAC-seq, and spatial omics
spatial RNA-seq analysis in Glioblastoma using Python
MIXER: An integrative algorithm for identifying co-expressed and cofunctional genes in multimodal transcriptomic sequencing data
Joint analysis single-cell and spatial transcriptomics data with stSCI
Advanced computational framework for integrated analysis of molecular and electrical brain network dynamics at the cellular level
Pseudo-label supervised graph neural network for robust, fine-grained, interpretable spatial domain identification.
Spatial transcriptomics analysis of inflammatory skin diseases
Spatial dissimilarity analysis in single cells
Spatial transcriptomics of cardiac tissue 24 h after ischemic injury
Codes for integrating spatial transcriptomics and single-nucleus RNA-Sequencing uncovering neuropathic pain-associated molecular pathological characteristics in the mouse spinal cord.
Analysis of Array-seq ST Datasets
The Cytocraft package provides 3D reconstruction of spatial configuration of transcription centers
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