The ESPResSo package
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Updated
Jul 24, 2024 - C++
The ESPResSo package
LAMMPS inputs and data files
A lattice Boltzmann code for complex fluids
The Morpho language 🦋. Morpho is a small embeddable language for scientific computing applications.
Publication quality path tracing in real time.
Pychastic is a stochastic differential equations integrator written entirely in python.
Computational statistical mechanics of field-responsive polymer chains
Code developed for a research project at the University of British Columbia focusing on a simple model of active particles, supervised by Jörg Rottler.
The Active Matter Evaluation Package (AMEP) - a Python library for the analysis of particle-based and continuum simulation data of soft and active matter systems
Python port of Generalized Rotne Prager Yamakawa hydrodynamic tensors.
Random And Maximal PACKing PACKage
2D simulation of confluent cell collectives based on a coarse-grained bead-spring model
Python code that can be used to analyze molecular dynamics simulations of proteins/polymers solvated in water. The first and second hydration shells are calculated, the molecular volume, the partial molar volume, and the number of waters associated with each side chain are calculated. This is specifically for PNIPAM but can be modified fairly ea…
Wiki of a research project at the University of British Columbia focusing on a simple model of active particles, supervised by Jörg Rottler.
Iterative training to explore glassy landscapes
Neural functional theory for inhomogeneous fluids: Fundamentals and applications
Code developed for a research project at Umeå universitet focusing on sheared packings of ellipsoids, supervised by Peter Olsson.
Python GUI for the quick processing, analysis and plotting of differential dynamic microscopy data
A deep learning approach for particle detection from super-resolution microscopy.
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