Performs semi-global alignments on FASTA sequences. Homework 3 for Dr. Miller's Intro to Bioinformatics class.
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Updated
Nov 7, 2014 - Python
Performs semi-global alignments on FASTA sequences. Homework 3 for Dr. Miller's Intro to Bioinformatics class.
Simple Java code for sequence alignment and scoring, built on top of biojava-alignment.
Alinhamento de sequencias,algoritmos de alinhamento global e semi-global, Biologia computacional.
Naive implementation of Smith-Waterman in Javascript
The GPU-version and MPI-version of PerM
HSEARCH: fast and accurate protein sequence motif search and clustering
Base librarys for sequencing data analysis.
Rust implementation of sequence alignment / Levenshtein distance by A* acceleration of the DP algorithm
Sequence alignment for bioinformatics
Fork of MUMmerGPU-2.0 that compiles without errors
GPU-based DNA sequence alignment program using Smith-Waterman
A simple parallel implementation of Smith Waterman sequence alignment algorithm.
Illumina (and SOLiD) sensitive read mapping tool (cloned from svn:https://scm.gforge.inria.fr/svnroot/storm/, original code from @marta- , with some work done by @yoann-dufresne)
Generalized Pair Hidden Markov Chain Model (GPHMM)
MTRAP: Sequence alignment by a new measure based on transition probability.
Application of two different algorithms for sequence alignment
DNA read mapping (seed-extension-aligner)
math578 sequence alignment assignments
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