Python scripts for performing bioinformatics for small read sequence alignment to reference genomes and SNP marker calling.

Extracting forms character without messing up the sequence.

Local Sequence Alignment Tool for Probabilistic DNA databases

Implementation of Needleman-Wunsch's algorithm for sequences alignment using BLOSUM62 matrix

Durham University Year 1 assignment to optimise simple sequence alignment scoring in bioinformatics implemented in Python

Phylogenetic tree maker for alignment and phylogeny inference. Performs global and local sequence alignments using the Needleman-Wunsch and Smith-Waterman algorithms, followed by tree construction via the Neighbor-Joining method.

Bio-Python algorithms

Sequence alignment algorithms

Project to perform sequence alignment of short DNA sequences of Anopheles Gambiae (common mosquito). This implementation leverages distributed computing through the HTCondor and Work Queue systems to drastically improve the computational runtime. The tool utilized to compute scores of DNA comparisons is swaligntool.

Projects developed under the Bioinformatics college chair during the 2020/2021 school year

Sequence alignment for bioinformatics

A Python script that for a parameter k, calculates the universal alignment of 2 sequences, with limitation that the alignment contains at most k unknown nucleotides. Nucleotide sequences are sometimes written in a 5-character alphabet, A, T, G, C, and N where N stands for an undefined nucleotide.

Algorithmic analysis of two different approaches for the sequence alignment problem. Done as coursework project for CSCI 570 Analysis of Algorithms

algorithm used in bioinformatics to align protein or nucleotide sequences. the algorithm finds the best alignments possible between the 2 strings. Techniques such as Recursive depth first traversing, dynamic programming were used.

Implementation of algorithms in various scientific problems

Algoritmos para el alineamiento de secuencias de ADN

sequence alignment

Mini projects for bioinformatics course at AUT, spring 2022.