Analyse combined miRNA/mRNA reads produced using Combo-Seq kit
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Updated
Jul 26, 2023 - Shell
Analyse combined miRNA/mRNA reads produced using Combo-Seq kit
High-throughput Workflow for Processing and Analyzing RNA-Seq Data
📑 A library of example code -aka cheatsheets- for tools I use or analyses I carry out pretty often. This repo doubles as an easy way to find the code I need without going through all my scripts.
Construction of IHGV sequences from RNA-seq
Reproducible and scalable technical pipelines for ChIP-Seq and RNA-Seq processing
Mapping of RNAseq data on reference genome using Hisat2 for reduced mismatch penalties
Salmon Alevin (single cell) quantification wrapper module for GenePattern.
The provided set of bash scripts constitutes a comprehensive RNA-seq analysis workflow, facilitating the processing and analysis of high-throughput sequencing data.
Performed a differential gene expression analysis with RNA-seq that compares the expression in human control breast cancer cell lines with lines treated by silencing the NRDE2 gene. A Salmon + tximport + DESeq2 workflow was conducted to pursue this.
Source code for "Molecular mechanisms implicated in myogenic differentiation of human alveolar mucosa derived cells" paper
DEMUX, ALIGN, DESEQ2 DGE CALLS
AHTA course project
Bioinformatics pipeline for lncRNA prediction in Arabiodpsis thaliana
Assembly of RNA transcriptome, differential expression analysis, identification of lncRNA candidates based on genomic context and protein coding potential.
Internship project for mapping reads from RNASeq data and creating contigs from the unmapped reads. The contigs were then BLASTed against a database of virii genomes.
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