Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.
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Updated
Feb 15, 2023 - HTML
Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.
Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially expressed genes. PowsimR is a flexible tool to simulate and evaluate differential expression from bulk and especially single-cell RNA-seq data making it suitable for a priori and posterior power analyses.
The START App: R Shiny Transcriptome Analysis Resource Tool
GREIN : GEO RNA-seq Experiments Interactive Navigator
Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
A course on Analysing Next Generation (/High Throughput etc..) Sequencing data using Bioconductor
An R package to plot interactive three-way differential expression analysis
NASQAR: A web-based platform for High-throughput sequencing data analysis and visualization
Summer school course materials collection
An R package to download and merge labeled single-cell RNA-seq data from the PanglaoDB database into a Seurat object.
Rmarkdown / compiled html files for human reprogramming dataset analysis
Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA
NGS Tutorial
An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictographic" (eFP) based on its RPKM expression level.
Supports de cours de l'Ecole de Bioinformatique Aviesan - IFB - Inserm "Initiation au traitement des données de génomique obtenues par séquençage à haut débit"
Gene expression viewer template
Focused multi-day workshop covering the material needed for a successful RNA-Seq experiment.
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