Project for the Transcriptomic course of "Bioinformatics for Computational Genomics" MSc
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Updated
Aug 31, 2023 - HTML
Project for the Transcriptomic course of "Bioinformatics for Computational Genomics" MSc
HTSeq (0.11.2) wrapper module: Counting reads in features with 'htseq-count'
Code to reproduce analyses in Iron Responsive Element (IRE)-mediated responses to iron dyshomeostasis in Alzheimer’s disease (Hin et al.)
Understanding the ageing of human brain endothelial cells using single-cell RNA-seq analysis.
Exploring Bioinformatics pipelines
Differential Gene Expression analysis in R using DESeq2
Analysis of summer nurse & forager and winter honey bee fat body and flight muscle transcriptomes
🐳📊📚 Galaxy Docker image for assisted generation of RNA-Seq and BS-Seq workflows
Data science project work with genomics/biological data
Cell-of-origin analysis for "Histone H3.3G34-mutant interneuron progenitors co-opt PDGFRA for gliomagenesis" (Chen*, Deshmukh*, Jessa*, Hadjadj*, et al, Cell, 2020)
Code and resources for bioinformatics analyses I've done.
This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster
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