reads
Here are 9 public repositories matching this topic...
Genome read alignments visualizer
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Oct 24, 2023 - Python
Preprocessing of raw reads obtained using ARTIC's protocol for sequencing SARS-CoV-2 genome.
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Feb 23, 2022 - Python
Python code to detect ECGR Mutations; Takes a reference genome and bunch of reads as input and finds mutations (1-3 bp length) where number of supporting reads greater than 5
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Oct 19, 2021 - Python
Filter alignments on sequence length and/or identity of first nucleotide.
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Dec 22, 2020 - Python
Python code to compute adatper content in reads, kmer content, per-base-GC content (at a specific position in a read alignment, against reference genome), per base NC content (at a specific position in a read alignment against the reference genome), per base seq quality (across aligned reads), per base sequence content, per base quality scores, …
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Oct 19, 2021 - Python
A Raspberry Pi Simple python Stand Alone Local Network Web Server. Automatically reads folder and file entries into a right pane selection list. Selected folder opens a new browser tab and Selected file displays content in browser left pane iframe. Right pane list can be ordered by date/time or alphabetic ascending or descending via settings.py …
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Jan 11, 2021 - Python
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