This is a Python package for classifying DAmFRET data based on supervised learning. The data can also be analyzed to allow mechanistic inferences regarding nucleation of ordered assemblies.
A Bio2BEL package for converting ExPASy to BEL
Repository of the FANDAS code for prediction ssNMR spectra from structure
PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.
Tool for predicting the functionalities of certain proteins and display similar proteins that was developed as part of my programming course.
Provides all known proteins for a given reaction, and ranks them based on how relevant they are for your project.
CaMELS: In silico prediction of calmodulin binding proteins and their binding sites
Split flow imaging microscopes (FlowCam and FlowCam nano) collage images into a single image.
MMIC for extracting and fixing PDB files converted to MMSchema molecules
A transformer network trained to predict end-to-end single sequence protein structure as a set of angles given amino acid sequences.
Algorithms to emulate the synthesis process of proteins.
This repository provides a Python implementation of the NapShift program to predict the backbone atoms' chemical shift values, from NMR protein PBD structures, using artificial neural networks.
A protein-glycan benchmark, ready for use with HADDOCK
Fast regex-based protein digestion and unique peptides finder tool
A native Windows application that allows for the conversion of DNA to RNA and its respective proteins. Despite being created on and for Windows, the application has been styled after the GUI found on MacOS. The executable is now downloadable. The current release is v1.0.0.
ProtPlot is a tool written in Python used to plot protein contact maps
This work was aimed at finding methods to identify the most distant proteins and most diverse subsets of proteins from large protein databases in a scalable and efficient way using a dataset of protein embeddings from SwissProt, data mining techniques and metaheuristics.
A Bio2BEL package for converting InterPro to BEL
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