R scripts used for analysis of data reported in Comparison of Small Gut and Whole Gut Microbiota of First-Degree Relatives with Adult Patients with Celiac Disease and Controls
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Updated
Dec 18, 2017 - HTML
R scripts used for analysis of data reported in Comparison of Small Gut and Whole Gut Microbiota of First-Degree Relatives with Adult Patients with Celiac Disease and Controls
An interactive Jupyter-based tutorial prepared for the de los Reyes lab, interested colleagues, and the North Carolina State University BIT 477/577 Metagenomics course
Analysis scripts, data files and plots used in the manuscript
R scripts used for the analysis of microbiomes associated with stony coral tissue loss disease (SCTLD) in the Florida Reef Tract
How to analyze shotgun metagenomic data with phyloseq - a walkthrough
Some of the analytical processes and tools we use to provide rigorous and actionable results to our clients.
Tuberculosis and the microbiome
R workflows used to analyze microbial community sequence data
R scripts used for the analysis of microbiomes of nursery-reared Acropora cervicornis
📓 Minimal cheatsheet for functions in the phyloseq R package
Analysis of 16S rRNA (dada2 amplicon sequence variants) from human volunteers given various vaccines following two different antibiotics treatments compared to no antibiotics.
16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo/
Working Demo on 16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Visit repo website for HTML output
R package for analyzing microbial co-occurences
Mothur procedures for 16S and ITS analysis
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