HPO archive of the ontology and annotations
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Updated
Mar 9, 2017
HPO archive of the ontology and annotations
Project to generate phenotype opposite_of relationships and investigate the effect on ontology-based algorithms
🐟 Zebrafish Phenotype Ontology: Build Tools (OBSOLETE)
HPO web browser created with Vaadin
Bayesian ontology querying from Bauer et al.
Code to generate ontology annotated objects (e.g. HPO annotated patients)
PhenoUnit testing framework
Scripts, data files and ontologies for the FLOPO project
Exploratory Research -- Clustering Similar Patients by Phenotype
GUI to build and modify Phenotype Algorithm Specification Ontologies
The QC software for the OBO version of HPO
Small program to query OMIM and store output in a local sqlite database.
Website for the Phenomics and Machine Learning Team
Package to serve public and freely-available data from rare disease patients.
Internationalisation of the HPO content
The QC software for the OWL version of HPO (only text-checks, not so much logic included)
Python library to work with HPO (Human Phenotype Ontology) terms and their gene/disease associations
Python library for extracting HPO encoded phenotypes from text
Indonesia Exome Rare Disease Variant Discovery Pipeline. Phenotype analysis part available on Streamlit and PyPi
IdeRare Phenotype Analysis suite : Convert Indonesia SATUSEHAT terminology (SNOMED-CT, LOINC, ICD-10) to Rare Disease Terminology / Ontology (HPO, OMIM) and find the likelihood differential gene and disease explaining patient phenotype
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