This repository contains the code for the project: Transcriptomic meta-analysis reveals up-regulation of gene expression functional in osteoclast differentiation in human septic shock
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Updated
Aug 27, 2020 - R
This repository contains the code for the project: Transcriptomic meta-analysis reveals up-regulation of gene expression functional in osteoclast differentiation in human septic shock
Investigating the use of hierarchical modelling for pathway analyses
Survival based clustering of gene expression data for disease subtyping
An R package for multi-dimensional pathway enrichment analysis (legacy repo)
Analyze and compare different pathway resources
Survival Analysis through the integration of expression data, phenotype data, and clinical data
Nextflow pipeline for microarray and RNA-seq
Survival Analysis through the integration of expression data, phenotype data, and clinical data
Use Jaccard index and constituent genes to identify groups of similar pathways
Retinal ganglion cells regeneration in 2 days post optic nerve crush retina | Lydia Tai | Dong Feng Chen Lab collaboration | Schepens Eye Research Institute, Mass General Hospital, Harvard Medical School
Population-based pathway analysis of SNP-SNP coevolution
PAVER: Pathway Analysis Visualization with Embedding Representations
A knowledge-based T2-statistic to perform pathway analysis for quantitative proteomic data.
Pathway enrichment analysis / visualize for Single Cell Data
Curated list of analysis pipelines for biological & clinical interpretation of data-driven findings
GRAPH Interaction from pathway Topological Environment
An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles
This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.
MAAPster is a comprehensive tool to perform transcriptome analysis of human or mouse Affymetrix gene expression data
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