A package that performs cell type annotations on single cell resolution of spatial transcriptomics data, find the niche interactions and covariation patterns between interacted cell types.
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Updated
Jul 2, 2024 - Jupyter Notebook
A package that performs cell type annotations on single cell resolution of spatial transcriptomics data, find the niche interactions and covariation patterns between interacted cell types.
Tools for Modeling Niches and Distributions of Species
ellipse and convex hull fitting package for stable isotope data
Workflow to fit niche models to species occurrence data using glmnet via maxnet package
General research to encapsulate everything from the atomic level to microorganisms, including industry sizes, the impact of technology, and now, startup expenses and tools required for each sector. A panoramic view of ecosystems and their respective scale.
Environmental Interpolation using Spatial Kernel Density Estimation
Species distribution modeling tools, including a python implementation of Maxent
This repository...
Faster, better, smarter ecological niche modeling and species distribution modeling
Testing methods for measuring variable importance in species distribution models
R Script for investigating past and present species distribution using MaxEnt (machine learning algorithm) and Environmental PCA (PCA-env) for niche dynamics of the species
Binned Relative Environmental Change Indicator (BRECI) for displaying differences between ENM output maps
Application of Taylor Diagrams to Ecological Niche Models/Species Distribution Models
Here, I assesed how climate change could impact Bangladeshi butterflies.
The codes for modeling species distribution have been placed in this repository.
Code and data input to replicate the article "Climate change effect on Octopus maya (Voss and Solís-Ramírez, 1966) suitability and distribution in the Yucatan Peninsula, Gulf of Mexico: A correlative and mechanistic approach".
virtualNicheR: creating virtual fundamental and realised niches
A set of functions used to subsample species records in the environmental space
Comparative analysis of abiotic niches in Ungulates
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