A statistical measure for gauging the polymorphic extent of sequences in a multiple sequence alignment.
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Updated
Aug 24, 2018 - Python
A statistical measure for gauging the polymorphic extent of sequences in a multiple sequence alignment.
A python pipeline that brings together tools for generation of consensus sequence, multiple sequence alignment, and phylogenetic analysis.
GACMSA: Get Allele counts from Multiple Sequence Alignment files
Bioinformatic Course - Programming Assignments - Winter 2022
Several small Bioinformatics projects implementing related algorithms, including Semi-Global alignment, Multiple Sequence Alignment using Star-Alignment, and MSA using PSSM profiles considering Gaps.
Detect and annotate proteoforms/domains from RNA-Seq multiple sequence alignments
(Deep) Reinforcement Learning Framework to align multiple sequences.
yes indeed
Python tool for relative mutation rate of different genes across viral strains.
AncFlow: A snakemake based pipeline for the ancestral sequence reconstruction of clustered phylogenetic subtrees.
Biosequence analysis library
Using deep reinforcement learning to solve the multiple sequence alignment problem.
This is projects of Bioinformatics
A tool for downloading HLA alleles, epitopes and frequencies
Cultivate your multiple sequence alignments to get better trees
Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.
PFAM's micro service to assist to Mistic2.
Analysis of the viral genomes of SARS-CoV2 using MAFFT and igtree
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