Flexible processing and analysis of plug microfluidics data
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Updated
Oct 7, 2022 - Python
Flexible processing and analysis of plug microfluidics data
Python 2.7 microfluidics automation system (pumps and Arduino controlled coplanar electrodes)
SeeVIS is a (S)egmentation-fr(ee) (VIS)ualization pipeline for time-lapse image data. It comprises three steps: 1. preprocessing, 2. feature extraction, and 3. an extended version of the space time cube with three novel color mappings adapted to cell colony growth.
Python code used in: Link A, Luna Pardo I, Porr B, Franke T (2023) AI based image analysis of red blood cells in oscillating microchannels. RSC Advances 41.
This directory is dedicated to the implementation of algorithms aimed at detecting droplets in microfluidic images.
Designs used in the 3DuF paper
An automated method for estimating micropillar dislocation induced by C. Elegans worms using bright-field videos & image processing
Programmable Fluidic Pumping System
Python Based Syringe Pump Control Program
Code of the paper by Baskaran R K R, Link A, Porr B, Franke T (2024) Classification of chemically modified red blood cells in microflow using machine learning video analysis. Soft Matter.
CYCASP is a methodology for investigating and understanding (C)olon(Y) growth and (C)ell (A)ttributes at the population level. It couples (SP)atiotemporal changes by relying on two novel data abstractions and a modular algorithm.
NR-Router is a tool that enables precise routing on glass-based and paper-based digital microfluidic EWOD (Electrowetting on Dielectric) chips with non-regular electrodes.
Deep Learning Detector for High Precision Monitoring of Cell Encapsulation Statistics in Microfluidic Droplets
PHD MA1 70-3xxx Series Syringe Pump
Numerical library for nonlinear diffusion problems in semi-infinite domains
A Python module for controlling Elveflow microfluidic devices
Automancer is a software application that enables researchers to design, automate, and manage their experiments.
Control software for CHEMYX Syringe Pump hardware. Includes core connection structures, template scripts for creating custom runs, and interactive GUIs.
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