Signal-level algorithms for MinION data
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Updated
Aug 5, 2023 - C++
Signal-level algorithms for MinION data
A tool to map bisulfite converted sequence reads and determine cytosine methylation states
R package for DNA methylation analysis
Deep neural networks for predicting CpG methylation
A (mostly) universal methylation extractor for BS-seq experiments.
tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies
Detecting methylation using signal-level features from Nanopore sequencing reads
Methylation/modified base calling separated from basecalling.
SCREW: A Reproducible Workflow for Single-Cell Epigenomics
R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing
Python-based preprocessing software for Illumina methylation arrays
ENCODE whole-genome bisulfite sequencing (WGBS) pipeline
Detecting methylation using signal-level features from Nanopore sequencing reads of plants
BiSulfite Bolt - A Bisulfite Sequencing Alignment and Processing Tool
Python package to analyze DNA methylation data
Differential methylation: Easy, Fast, Identification and ANnoTation
An information-theoretic pipeline for methylation analysis of WGBS data
A Snakemake pipeline for RRBS data analysis
Bioinformatics Pipeline
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