Snakemake workflow for the processing of EMseq data
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Updated
Jul 3, 2023 - Python
Snakemake workflow for the processing of EMseq data
Convert methylation data to sparse objects for machine learning.
Web frontend for pyllelic bisulfite DNA analysis.
A collection of simple scripts to facilitate the setup of everyday epigenetics experiments and to handle genomic methylation data
Using Snakemake to implement ENCODE WGBS pipeline
DNA methylation annotation visualization tool
A simple python script to find the amount of methylation after bisulfites sequencing from .fasta files
Process SRA bisulfite sequencing data easily with Bismark-MethylDackel pipeline.
CLI tool to link methylation tags between two files
Accurate and robust inference of cell type proportions from bulk gene expression or DNA methylation data
This workflow uses Dorado, Samtools, Clair3, WhatHap and Modkit to extract a modification count table containing information for each relevant site.
Snakemake Workflow For Running Biscuit https://github.com/huishenlab/biscuit
The tools for estimating methylation heterogeneity
Produces coverage and methylation percentage data from FASTQ files.
Re-implementation of J. Beaulaurier et al's SMSN strategy, using the default PacBio tools
A Python API library for exploration and data retrieval from NCBI
cfDNA methylation probe design from mybaits targeted sequencing
Comprehensive tool for visualizing genome-wide cytosine data.
Bismark-MethylDackel DNA methylation quantification pipeline in snakemake.
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