Snakemake workflow for the processing of EMseq data
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Updated
Jul 3, 2023 - Python
Snakemake workflow for the processing of EMseq data
Convert methylation data to sparse objects for machine learning.
Genetic Genie Methylation Pannel clone to execute it in local in case you don´t wat to upload your DNA data to the Internet due to confidenciality.
A simple python script to find the amount of methylation after bisulfites sequencing from .fasta files
A collection of simple scripts to facilitate the setup of everyday epigenetics experiments and to handle genomic methylation data
The tools for estimating methylation heterogeneity
Re-implementation of J. Beaulaurier et al's SMSN strategy, using the default PacBio tools
CLI tool to link methylation tags between two files
Process SRA bisulfite sequencing data easily with Bismark-MethylDackel pipeline.
Web frontend for pyllelic bisulfite DNA analysis.
Produces coverage and methylation percentage data from FASTQ files.
MethPhaser: methylation-based haplotype phasing of human genomes
Bismark-MethylDackel DNA methylation quantification pipeline in snakemake.
An open platform which provides information about miRNAs and genes from different popular databases
DNA methylation annotation visualization tool
Comprehensive tool for visualizing genome-wide cytosine data.
This workflow uses Dorado, Samtools, Clair3, WhatHap and Modkit to extract a modification count table containing information for each relevant site.
Python toolkit for parsing, processing, and analysis of Illumina methylation array IDAT files
cfDNA methylation probe design from mybaits targeted sequencing
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