Code for an analysis of the association of lipid regulating agents (e.g. statins) with incidence of dementia outcomes
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Updated
Oct 13, 2021 - Stata
Code for an analysis of the association of lipid regulating agents (e.g. statins) with incidence of dementia outcomes
My B.Sc. project involves a collaboration with the M3 Lab Group at SDU. The purpose is to create a Shiny app that will be published. My code will be used in the app to visualize and analysis Metabolomics, Lipidomics data.
epiLipidome Identifier and Optimized Nomenclature
Predicting lipid abundance in a murine brain section from spatial gene expression
Visualize relationship between pH, temperature, and the relative abundance of iGDGT lipids.
Statistical analysis portion of the LMQ software. Note that this software is incomplete.
Data, scripts, and figures for "Homeocurvature adaptation of phospholipids to pressure in deep-sea invertebrates"
💻 Automatic lipid mapping topology writer
The purpose of the study was to look at the causal relationships between lipid profiles (TG, HDL, and LDL) and diseases, drugs, and lifestyle choices. MR analysis was used and applied to GWAS from the UK Biobank to examine these associations using analysis software RStudio.
LORA: Lipid Over-Representation Analysis
Quantify lipids using a feature table and internal standards table
The ProLint Webserver
A molecular dynamics approach to study the permeation of nanoparticles through lipid bilayer
ADViSELipidomics is a novel Shiny app for the preprocessing, analysis, and visualization of lipidomics data.
A collection of tools for characterizing membrane structure and dynamics within simulated trajectories of molecular systems.
MolMeDB is an open chemistry database about interactions of molecules with membranes.
LipidHunter is capable to perform bottom up identification of lipids from LC-MS/MS and shotgun lipidomics data by resembling a workflow of manual spectra annotation. LipidHunter generates interactive HTML output with its unique six-panel-image, which provides an easy way to review, store, and share the identification results.
Optimization tool for calibrating coarse-grained force fields of lipids, relying on the simultaneous usage of reference AA trajectories (bottom-up) and experimental data (top-down)
💻 Build hydrogen atoms from united-atom molecular dynamics of lipids and calculate the order parameters.
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