K-Mer management tools
-
Updated
Feb 5, 2022 - Python
K-Mer management tools
A Streaming Algorithm for Estimating k-mer Counts with Optimal Space Usage in Parallel
This is our implementation for D2 distance algorithm for k-mers.
Count canonical kmers with Emil Ernerfeldt's emilib::HashMap
Count canonical kmers with Google sparse_hash_map
A program to read sequences from fastq file and find out the frequency of all substrings with length k across all sequences in the file.
Count canonical kmers with STL unordered_map
Repo for code and data related to project developing methodology for applying Harmonic Mean P-Values to sliding windows of multiple aligned genomes.
Count canonical kmers with Malte Skarupke's bytell_hash_map hash table
Counts k-kmers and sorts top "k" kmer by occurrence.
A practical on genome assembly proposed during the 2019 ICME
Repo for Computational Systems Biology and Functional Genomics @ University of Maryland, College Park
Count canonical kmers with Boost C++ `boost::unordered_map` hash table
Add a description, image, and links to the kmer topic page so that developers can more easily learn about it.
To associate your repository with the kmer topic, visit your repo's landing page and select "manage topics."